RNA id: AMCG00002155


Basic Information

Item Value
RNA id AMCG00002155
length 1122
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00002155
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5264007 ~ 5286782 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGAAATCAGGTGAGGATGCAGATTCGGTTTGTGGGGCTCAGTGTCGTGAATGGAGATAAAAGAAAGAATAGAACGATTTCATGTTCAGGATCGCTATATTACAGTGCCGTCCTATTTGGCGTCCTGTTGAAACGTGCTCTTCTGTTTCCTCCTGCAGCGCCGCCCCTCTCGATCTCGGTGGTGGCAGCAGATACGCCGGCGCCCTTCAGCCGATACCAGGCCCAGAACTTCACCCTGGTCTGCATCGTGTCCGGAGGAAAACCTGCGCCTACGGTATACTTCAAGCGGGACGGTGAGCTGATTGAGGTGATCCCATATGTGCAGCCCACGGCAGGGGGCGAGGGCGCGGGGCTGAAGGGGCCACGGCCGCTGATCAGCCGAGAGCTGGATGACACCAAGCTGCAGAAGTCGCTCTCCCTGCTGGACTTGGATGGCAAGCCGGCCCGGCTGTTCACGGAGAACCCCCTGAAGGGCTACACCCCTGGGGCTCCCGGCTTCGAGCCCAGCCCCGCCACCGAGGTCATCCCGGAGACGGTGGTTAGCCGAGAGTTCCCGCGCTGGGTGCAGAGCACGGACCCCCTGTACTACTTCCGCCACGCCCACATCCCCCTCAACGACGGGACGGTGGAGGTGCGCGCCATGATCACCTGGACTCTCAACCCCCAGCTGGACAACGATGCCCTGTTCAGCTGCGAGGTCAAGCACCCTGCCCTCTCTATGCCCATGCAGGCCGAGGTCACCCTGGCGGCTCCCAAGGGCCCCAAACTTTTAATGACCCCGACCCGAGCAAAGGTAGGGGACACAGTCCGAATCACCGTCCAAGGATTCCAGGTAGGATCGGCCGGGAATGAGGTTTTCCCAGAGCCTCTTTTCACCTGGACTCGGGTCGGAGGTCGTCTGTTGGATGGGAGCTCAGAGCACGATGGGAAGGAGCTGGTTTTGGAGCGAGTGCCAGCCGAACTGAATGGGTCGATGTACCGCTGCACGGCCCAGAATCCCCTGGGCTCTACAGACACTCACACTCGACTCATCGTCTTTGACGCCGCCTCTTGTTTGGAAACGCTGGGACTGACCGTGGCTCTGCTCGCCCTAACAGTGACTCTTGAGCTGACGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151881 lncRNA downstream 35876 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 127001 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 147990 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 541826 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 694713 4567439 ~ 4569294 (-) True G121039
TU151991 lncRNA upstream 571219 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 584886 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 646876 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 688943 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 923803 6210585 ~ 6213660 (-) True G121384
AMCG00002153 mRNA downstream 9221 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002154 mRNA downstream 49599 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002144 mRNA downstream 452645 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 511675 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002141 mRNA downstream 516568 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002158 mRNA upstream 474052 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002157 mRNA upstream 518060 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002166 mRNA upstream 588000 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002164 mRNA upstream 601708 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002167 mRNA upstream 691696 5978478 ~ 6015393 (-) True AMCG00002167
TU151612 other downstream 1044130 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1477463 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 1547755 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2136063 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2259090 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2549713 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4545129 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4555313 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6238111 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 6380973 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile