RNA id: AMCG00002158


Basic Information

Item Value
RNA id AMCG00002158
length 1620
RNA type mRNA
GC content 0.64
exon number 9
gene id AMCG00002158
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5760834 ~ 5786032 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCCTGCGCCTCTGCATTCGCTCACATTCTGTATGGGGGGACGGCAGTCGGCAGGGGATTCTGGGAGAGATGCTCACTACAGAGCGTGCTGTCATGTCAATGGCCCCATGCTGGAAGCTGCTCTTCACAACCCAGTCCAGTGCGCTCTGCTGGGCTTCTCAGCTGCCAGTACCTCTCTGCCCCAGGGTTATCTGTGGGTGGCCAGTGGGGGAGAGTCGAGCCAAGGCCAGGTGGAGATCTTCTCCCTCAACAGACCCACGCCCCGCGCCGTCAAGTCCTTCCAAGTGGGGGCACCGGTGCTGTGTCTGGAGTATGTGGCCGACCCCAGTCCAccagaggaggcagagagtgCGGTCTGTGAGAAGATGAGTGCAGTGGGAAACACCATCTGCGTGGGGCTGCAGGATGGCAGCATCCTCATCTATGGCAGTGTGGACACGGCCGCCCAGTGCCTGTTGACCTTCCAGGACCCTGGGGGGTGTCCGGTGCTGTGCCTGAAACATTCTGCCAACTTCCTGTTCGCCGGGATGAGGGACGGGACCGTCGTTGTTTACAGCCGTAAGAATGGCGAGGAATTGTGGGACCCCAGCTCGTGTCGGCGTGTGAGCCTTGGCCAGGAGCCCATCCGCACCCTGCTGGCGCTGGAGGACTCAGTGTGGGCCAGCTGTGGCAACAAAGTCACAGTCATCGAGGGCAGCAGTTTGGGAACGCAGATCGAGCCGCGCGATGTCAGCTGTGGGGCGGTGAGAGGTGGCTCTTTAGGGAGGTTCGAGGCGCATCAGGACAGCACGGTGAGCGTGGCACACATGGCCCGGGCGGGCGGCGGCGTGTGGATGGCGTTCTCTGAGGGCTCGTCCATCCGCCTGTTCCACACGGAGACCCTGGAGCACCTGCAGGAGATCAATATCTCCACGCGGTCGGCCTTCCACGGACCAGGCAAGTCGTGGTTAAACGGTGAGAAGAGCGTGCGTGTGACCAGTCTCCTGATCTGTCAGGGGCAGCTGTGGGTGGGCACTGCCCAGGGTATGATCATCACACTGCCAGTGCCCAAACTGGAGGGCATCCCCAAGATTACAGGTAAAGGAATGACCTCTCTGAATGCTCACTGCGGCCCGGTGGACTTCCTGGTGGCCACATCCAGTACACTGTCCCCAGAGCTGCTGAAGAGGGACTCGATGGCGGATGGCCCAGACGTGGCCAGTGGTGGGGAGGACAAGACTGATTCCTCTTCCCAGGAGTCTCTGCATCAGGGCACCACCCCCTGCCACGAAGGCCGGCGCAAAGGCCTCCTGCTGCAGTACCGCCTGCGCTCCACCTCCCAGCTGCCCGGCAAACCCCTCACAGCCCGGGCCGAGGGGGCATCCgactcctcgctggagtccctgGAGCACAGCCTGGAGGACGGCTCCATCTATGAACTGACCGACGACCCGGAGGTGTGGGTGCGGGGCCGGCCCTCGGCCCGGGAGGgcgggaggagggagagggtcaCCTCGGCTGCAGTCATCTCCGGGGGGAAGGGGTTCCGCAGGCTGAGCGGCGGCAGGACGGCGGGGGGCGGCGGTGAGGCTTCGGAGAGTACGCTCATGGTGTGGCAGCTCCCACTCACCGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151881 lncRNA downstream 532703 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 623828 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 644817 5110602 ~ 5116017 (-) True G121151
TU151778 lncRNA downstream 1038653 4716592 ~ 4722181 (-) True G121111
TU151682 lncRNA downstream 1191540 4567439 ~ 4569294 (-) True G121039
TU151991 lncRNA upstream 71969 5858001 ~ 5861642 (-) True G121271
TU151999 lncRNA upstream 85636 5871668 ~ 5874136 (-) True G121274
TU152015 lncRNA upstream 147626 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 189693 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 424553 6210585 ~ 6213660 (-) True G121384
AMCG00002155 mRNA downstream 474052 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002153 mRNA downstream 506048 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002154 mRNA downstream 546426 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002144 mRNA downstream 949472 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002142 mRNA downstream 1008502 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002157 mRNA upstream 18810 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002166 mRNA upstream 88750 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002164 mRNA upstream 102458 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002167 mRNA upstream 192446 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002173 mRNA upstream 247812 6033844 ~ 6085952 (-) True AMCG00002173
TU151612 other downstream 1540957 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 1974290 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2044582 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2632890 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2755917 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 2050463 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 4045879 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 4056063 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5738861 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5881723 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile