RNA id: AMCG00002163


Basic Information

Item Value
RNA id AMCG00002163
length 1317
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00002163
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5939885 ~ 5962194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCCAGACCGGCCGCACGGTGGCAGCACCGGCGAGGGAAAAGGCTGGAAACCCGTATCCCAGCTCCGTCTCTCAAGGATGTGAACCGTCCCTTCCTGTTTGACTCCAGCCTGGGAGACACAGGAGCTGCGCTGGAGAGACACCCCGGGCTCGACCATGTCTGTGATCCTGCTGTCAAAGGCGTGCTCGTTTATGCTGTAGCGTGCACGACAACAACAGCAGCCGCGTCTATTTATTGCAACCTTTCATATCGCCGTTTTATTTGTGATATTGGATATTGCACCGCCACagccatttttcatttttttctccatttcaatGATTGTCCTGTTCACATTCTCATGGCGGAGACTAAAATAATCTATCACATAGACGAAGAGGAGACTCCTTACTTGGTGAAACTGACAGTTCCTCCCGAGAAAGTCACTTTGGCAGATTTCAAAAATGTCCTCAATAATCGCCCGGTCAACAGCTACAAATTCTTCTTCAAATCCATGGACCAAGACTTTGGCGTTGTCAAGGAAGAAATCTCCGATGATAATGCCAAACTGCCCTGCTTCAACGGGAGAGTGGTGTCCTGGCTGGTGCTGGCGGAGAGCTCTCACTCCGACGGAGGGTCCCAGTGCACAGAGAGCCAACCGGAGCTGTTGCCCCCACTGGAGAGGACTGGGGGCATCGGGGACTCCAGACCGCCCTCCTTCCATGCCAACGCAGTGGGCAGCCGGGACGGCCTGGACACGGAGACGGGCAGCGAGTCGCTTCTGAGCCACcggagggagcgggagagggagcGGGCGAGGAGGAGGGCACGAGAGGCTGAGTcttttatattatttaaaacaatgctgcATTATGATGTAATGGATGTTCTTATTGTAGTAGAACTCGTTTCCGCCAGCATTCCATCATTCTCCTGTTGTGTTCCAGTGGAGAAGCTCCAGTTAGCGCAGTTTGGTGCGGATTGCCCTGTGCACCTGCCACTCACGGGCTATAACTTCCCTTATATAATGTGTAAAGCGGCTTTGCGGAGATTCTCCCGGGATCCTCCCACAGAGTTACTTTTTCCCGGGAAGGCTGTCCCAGTGGAAATCTCCCAGTCTGTTCCACGTatCTTAGCAGATCAGaaagtgagagtgtgtgtgtgtatgtacagacACAATTACTgtatatctatgtgtgtgtcagaccaCCCCTTCCTGTCGATTGTGCACCTACACAACTATCGTttCTGTACCTGGCACAATCAGTGTCTtctgtacagttgtgtagtgaGTGctggcagcagtgtgtgtgaacAGCTGTACAGGAGTGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 369638 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 663962 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 711786 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 735271 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 737423 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 315324 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 365003 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 830782 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1598872 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1684524 7646718 ~ 7648316 (+) True G121688
AMCG00002160 mRNA upstream 1826 5919626 ~ 5938059 (+) True AMCG00002160
AMCG00002161 mRNA upstream 23791 5914271 ~ 5916094 (+) True AMCG00002161
AMCG00002156 mRNA upstream 67174 5861438 ~ 5872711 (+) True AMCG00002156
AMCG00002159 mRNA upstream 163360 5770252 ~ 5776525 (+) True AMCG00002159
AMCG00002151 mRNA upstream 699185 5238311 ~ 5240700 (+) True AMCG00002151
AMCG00002162 mRNA downstream 3 5962197 ~ 5972847 (+) True AMCG00002162
AMCG00002165 mRNA downstream 10677 5972871 ~ 5975345 (+) True AMCG00002165
AMCG00002170 mRNA downstream 138709 6100903 ~ 6104554 (+) True AMCG00002170
AMCG00002169 mRNA downstream 147025 6109219 ~ 6120051 (+) True AMCG00002169
AMCG00002168 mRNA downstream 158359 6120553 ~ 6168690 (+) True AMCG00002168
TU151873 other upstream 716387 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2400331 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2403457 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 2980410 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 3999069 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 624460 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 624460 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1431606 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2791532 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3882086 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile