RNA id: AMCG00002164


Basic Information

Item Value
RNA id AMCG00002164
length 1968
RNA type mRNA
GC content 0.56
exon number 16
gene id AMCG00002164
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5888490 ~ 5903073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCAGCAGAGAACCGAGCGCCTGGAGGCCGGGAGGACCAGCCGCGCCGTGTACGTGGTCGGGACGGAGATGGTCGTGGACCTGCACAGGAGTGCCCCCCCTGGATCCAAGTTGTTTGAAATCCAGTGCACCCCAGCAGTGAAATACAGGATAACCCCCTCCACCAAGGaccccttccccctccctctgAAAGCAGGGACCTCTCTGATCTTCACAATGGATAAGGCCAGCAAAGATGTCAACGATAACAAGGTCTCAGTGACTTATTTCGGAAATAAATCTGAGAAGCTGGACAAAGCCATCCTTCACCTCACGGCTCTGGACATCTCCTTGGATGTGGACGCAGACCGCGATGGTGTCATTGAAAAGAACAACCCCAACAAGGGCTCGTGGAAGTGGGGCCCTGATGGGCACGGCGCCATCCTCCTTGTAAACTGTGACGCAGAGAACTACTATAAGGTGCCAGACTCTGAACTTGATAAAATCAGCAAGAGAGCAGATCTGAAGGACATGTCTCGCATGTTGCTGCGGACTAGCGGGCCTGCCGAACTGCCCAAGGGATACAAGCTCACCCTCCACATCTCGAAGAGCACCGCGGAAAACATTGGCGTCTTCCAGGAGCGAAGCATAAAGATTTCTTCTATCAGTGATTACTCCCCGGTCCTGGGCCGAGACAAGCTGTGCCACATCGTGGAGTACAAGGGCGGGACGTCCGAGGTGGAGTTCTACGTTGAAGGGCGCAGGTTTCCAGATGAGGGATTCAAGGGTCTGGTCACCATCAACCTCAGTCTGCTGGAGCCCATCAGCAAGGGTTTCCCGGAGGTGCCCATCTTCACAGACACCGTTATGTTCCGTGTTGCCCCCTGGATCATGACCCCCAACACACTGAATCCCGTGGAGGTGTTCGTGTGCAGCACCCAAGACAACTTCCAGTTTCTGAAGGGCATGCGCAGTCTGACAGCGCGGACTGGGTACAAACTGAATACCTGCTTCCAATACATGAACCGTGGGGACCGCTGGATGCAGGACGAGCTGGAGTTTGGCTACATCCAGGCCCCACATCATGGCTTCCCGGTGGTGTTCGACTCTCCGCGAGATGGCGATCTCAAAGACTTCCCTTACAAGGAACTGATGGGCCCAGATTTTGGCTATGTGACTCGAGTGTCCTTGACCGAGAATGTGAGCAGCCTGGACTCCTTTGGCAACCTGGAGGTCAGCCCCCCGGTCACGGTCAATGGAAGGGAATATCCCCTGGGTCGGATTCTCATTGGCTGTGCCTTCCCTACGGCTACCAAAGGCCGAAACATGACCAAGGTGGTTCAGGACTTCCTGTGGGCTCAGAAGGTCCAGGAGCCCATCGCACTCTTCTCTGATTGGCTGTTTGTTGGCCATGTGGACGAGTTCATGAGCTTTGTCCCAGCTCCTGACagaaagGGTTTCCGTCTACTCCTGGCCAGTCCAGATGCAGGGTACAAGGTTTTCCGCAGGCTGCAGAAGGACGGTCATGGAAAAGCCAAAATGTTTGAAGGAATGAAGGAAGAGATCTCGGTGGATGATATTTTGAGTAATCCGCAGCTCCAGGAAGCGAATGACTTTGTCCAGAGCTGCATTGACTGGAACCGAGATGTCCTGAAGAGAGAGCTGGGGCTGGAGGACGCCGACATCATCGACTTGCCCATCCTCTTTAACCTGATGAAGGACATGCGGGCAGTTGCCTATTATCCTGACATGGTTAACATGATCGTGCTGGGCAAGAACCTGGGCATCCCCAAGCCGTACGGCCCCAAGGTGGGCGGCCGCTGCGCCCTGGAGGCCGAGATGTGCTCCCTGGTGGAGGGCCTGGGCCTGAGCTGCACCTTCATCGATGACTTTGCCTCTTACCACAAGCTGCTGGGCGAGGTGCACTGCGGCTCCAACGTGCGCCGAGAGCCCTTCGCTTACAAGTGGTGGAACATGAAGCTGTGA

Function

GO:

id name namespace
GO:0018101 protein citrullination biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004668 protein-arginine deiminase activity molecular_function

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151999 lncRNA downstream 14354 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 26848 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 660359 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 751484 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 772473 5110602 ~ 5116017 (-) True G121151
TU152015 lncRNA upstream 30585 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 72652 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 307512 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 374395 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 479360 6382433 ~ 6385919 (-) True G121443
AMCG00002166 mRNA downstream 4779 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002157 mRNA downstream 60965 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 102458 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002155 mRNA downstream 601708 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002153 mRNA downstream 633704 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002167 mRNA upstream 75405 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002173 mRNA upstream 130771 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002172 mRNA upstream 203117 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002177 mRNA upstream 344193 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002178 mRNA upstream 354974 6258047 ~ 6262305 (-) True AMCG00002178
TU151612 other downstream 1668613 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2101946 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2172238 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2760546 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2883573 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1933422 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3928838 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3939022 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5621820 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5764682 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile