RNA id: AMCG00002165



Basic Information


Item Value
RNA id AMCG00002165
length 756
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00002165
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5972871 ~ 5975345 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCCCGGTGGAGGCTGAGTGACCGCTGCCATGAGAGTTACAGCCTCCTCCCTGCCTGCCGTCCCCGACGCAGAGCTCACAAACTGCTGCACATGTTGCCCCCTGCCCCGCCATCCTGCTTCACCAGTCTGTGTACAATTGCAATGGCCGTGCAGACTCTGCTGTACTTAACCAAAGGCCGCCAGCCATCAGGGTCTGGATCTCAATCCCCCAGACCCCACGTCCTGGAAGCACAGCTGGCCTGGGGGCTGACTGTTGGACCTGCGCTCAGAGCTCCAGCAGAGCTTCTCTCTGAACCTCCCAGACTGTTACAGGGTTGCACATCTGGATCCTACCTGACCGAAGATGCCCTTTGCTTAAGACAGGTTTTAGGTGAAGCGAGTGCCTGGCTTTTACAGACCACAGCCGTCCGCAGCACTGGAGCTATTAAACTTGGCCTAAAGCAGACAGATAAGACAATCAGACTTGCACAGCCCCCTCCTGTGTCTGCAGCCCAGAGCGCGTACTGCAACCAGCCACGATCCTTGTTGCCAAACGATGCACGATGTGTTGTTGCCAATATTGTCAAATTATTCCACATTGATAAACCTCAGTGTGACAGATCTGATCCAAACCCTGCTGGACTGGTGATGGGAGTGAAGCATCGGATACGGCCTCGTGCCAAACAGCTGAAGCCAAACCAGAGGTGCGGTTGCTTTCCCACTCTCAGCCCAGCTGTGCCTCCTTCTCCTGCAGACCTAAACAAGCCTTTGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 402624 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 696948 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 744772 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 768257 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 770409 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 302173 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 351852 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 817631 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1585721 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1671373 7646718 ~ 7648316 (+) True G121688
AMCG00002162 mRNA upstream 24 5962197 ~ 5972847 (+) True AMCG00002162
AMCG00002163 mRNA upstream 10677 5939885 ~ 5962194 (+) True AMCG00002163
AMCG00002160 mRNA upstream 34812 5919626 ~ 5938059 (+) True AMCG00002160
AMCG00002161 mRNA upstream 56777 5914271 ~ 5916094 (+) True AMCG00002161
AMCG00002156 mRNA upstream 100160 5861438 ~ 5872711 (+) True AMCG00002156
AMCG00002170 mRNA downstream 125558 6100903 ~ 6104554 (+) True AMCG00002170
AMCG00002169 mRNA downstream 133874 6109219 ~ 6120051 (+) True AMCG00002169
AMCG00002168 mRNA downstream 145208 6120553 ~ 6168690 (+) True AMCG00002168
AMCG00002171 mRNA downstream 195734 6171079 ~ 6173906 (+) True AMCG00002171
AMCG00002175 mRNA downstream 225517 6200862 ~ 6207882 (+) True AMCG00002175
TU151873 other upstream 749373 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2433317 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2436443 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3013396 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4032055 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 611309 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 611309 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1418455 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2778381 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3868935 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile