RNA id: AMCG00002166


Basic Information

Item Value
RNA id AMCG00002166
length 402
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00002166
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5874782 ~ 5883711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGACGTGTATAGCTGCATCATGCCATTGCTGGGGGTGGTGTTTGCAGCATGCGAGTGGACAGTATGCTCCCGAGAGTACATTGAGTTCAGATTTGATCAAGACACAGCCAGCTGGGCCCTGGGTCACTGCCAGGCCTGTGAGGAGAGCAGCGCCTGTGAGAGGCCCTGTGCAGGACCAAATGGACACCTGTTTAGAAGTGTGGGGAATGAAAAAAGAGTGGATGGTATTGTCAGTAATCCACAGCTTCAGGAAGCTAATGACTTTGTCCAGGTTAACATGATCGTGTTGGGCAAGAACCTGGGCATCCCCAAACCGTATGGCCCCAAGGTGGGCGGCCACTGCGCCCTAGATGTGCTCCCTGGTGGAAGGCCTGGGCCTGAGCTGCACCTTCATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151999 lncRNA downstream 646 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 13140 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 646651 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 737776 5128038 ~ 5137006 (-) True G121152
TU151835 lncRNA downstream 758765 5110602 ~ 5116017 (-) True G121151
TU152015 lncRNA upstream 49947 5933658 ~ 5937833 (-) True G121288
TU152051 lncRNA upstream 92014 5975725 ~ 5979623 (-) False AMCG00002167
TU152141 lncRNA upstream 326874 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 393757 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 498722 6382433 ~ 6385919 (-) True G121443
AMCG00002157 mRNA downstream 47257 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 88750 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002155 mRNA downstream 588000 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002153 mRNA downstream 619996 5252375 ~ 5254786 (-) True AMCG00002153
AMCG00002154 mRNA downstream 660374 5201418 ~ 5214408 (-) True AMCG00002154
AMCG00002164 mRNA upstream 4779 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002167 mRNA upstream 94767 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002173 mRNA upstream 150133 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002172 mRNA upstream 222479 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002177 mRNA upstream 363555 6247266 ~ 6247869 (-) True AMCG00002177
TU151612 other downstream 1654905 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2088238 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2158530 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2746838 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2869865 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1952784 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3948200 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3958384 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5641182 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5784044 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile