RNA id: TU152051


Basic Information

Item Value
RNA id TU152051
length 3355
lncRNA type sense_over
GC content 0.43
exon number 3
gene id AMCG00002167
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5975725 ~ 6015393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGATTGTAGGGCTTTGTTTGTGCCGGCTTGTTTGGAAATATTATTGTGCTGTAAAGCAATTTATGCAttgtaaaaatattacaattcatTAATCTGTATTACCTATGGAATCTGTCTCTCACGCTGTTTTAATCTGCACCCCATtgtctgtgtctccctgtcAGTGTGCGAGTGGGGCCGGTTTGGGGAGGGCTGTCAGGAGTCATGTGACTGCGAAGGGGACACACCTTGTGATCCAGTGAGTGGAAGGTGTCTGTGCCCTCCGGGGAAGACCGGAGCCAAGTGTGACATAGACTGCCGAGCGAACCGCTTCGGGCCGGACTGCACCGAGACCTGCGAGTGTGGGAACAACGGGCAGTGTGACCCTCGCAATGGCCACTGCACCTGTCTGTTTGGGTGGATAGGGCTCACCTGCCAAGAAGgagagagagacagagcccTTCGCATCTGAACACATCTGTATAACGCCCCCGGCCGCCTCGCTGCTACCGGCACCTCGCCCCCTGACCCCCTCCACGGGCCGTGCCAACAAGAGCGATGGCCTTGTCAACAATCAACCCCGCAACGAGGGCACATCCATCACAGCCCATGCAAAACACTGAGATCTGACCGCGGCATGTGATGGCAATCATGAAACTGGACTATGGAAGTAGAGAGGTCTTCCAGAGTTTGCATGGAAACATGGCACTCTTTGAGGAGGAGGCTCTTTCAGCACTGAGATGATCTTGGTGGATTGTTGTACCTTCTTTCAAGGAGAGTTTTGGGCCAACGAACACCTAAAGGAGCAGGCCTCACCCCGCTGGGCTGCTGATACAGTGGAGGCGACAGTTCAAGTAGGGGTTCAGATGCCTGCATTGAGGACCTCTGTGCCTTCGCCTTGGCTCTCTGTTCTCCCATCAACCAAGCTTTTCAGGGGACCCAGGACCTCAGCAGTCTGTTGGACAAGCGGCTCTTCCTGAACCGTGGACAATTGTGGACATCGCAGTGCTGCCTTCTGTACCGTTTACTGTAATTAAAAGGAGAAtaactattttaatgtttgtttattaaaccaGCAGTTAATCGTGGGGCAGACTTACATAAGAAGAGAATTCAATTGGCAATAGAGGCGATGTCTAAAGCCCGGCCATCAGCGCCAGAACACCAGCCGTGCTCCGAGTGTTTGGAAGTACTTCTGAGATTAGATTTTTTCCTCACCGGGGCATCTTACCTCAGACACTCATGACCTCATCCGGcctatatctgtgtgtgtgtttgtgtggcatGTGTATATAGAGACCCATGCGCTCTGCACTCTCTCACtgttttcctcttcctctccatcTTTATAGAGAACTGTAGAGAATAGCAGATCGGATTTTGAAATGCTAAAAGGAAAATTCCTCTGGGTCAAGCATACTTAAGAGGCAGGGATATGGGTTGTTAGAGTCACAGTCTGGATATGCAAGACAGCTCGACATTCATTGCAGTGTCATCGATCTCGGACTCCGCAGTGAGGTCCTTTTGGCAGATGCAGGAAGGAAAGaggtttgaaaatgttattgacCAGCAATATCTCTATTTGAATCCGGGCGATGGATACTGTCCGTGTGTGCGTCACCCCTCTCATTTCGGTGCACCTTTTCCTCTGACACCAGGGAGTCAAGGTCAGTTCCAAATGGcctttatttgattattttgaatgattaTCTACATTATGTGATGTACAGGTGGTTGACAACGATTTTACAATGTAGCTCTTCAGGACAGCTGAAGTATggcatagtgtgtgtgtgtgtatttatgtatgtatgtttgttgaTACGCAAAGGAAATTATATTAAGCTTCACTTTCAAACGAGTCCAGTTTAAAAGCAATACAAGAGTCAATAGGAAAAGGTCCGTTTCCTTTTGTCTGAAGAAATGGCAACATAATCTCATCAAAAGACATAGTTGGTGTTGGTTGAAAATATGTCACTGGTTCTATGTTGATCTAGTTTTGGATTGGAAATGTTTCGCTGGATCTATCCATGACAGGGTAGGAGAATGGATATGCATACTTCCGTGCcctcagttttttcttttctcctttgcCTGCACTGCATTAAACCATATAAGCCATGAGCTATGAAGTTCACACACCCTTCATCTGaagtaatgttattatttgattaatttagattaatatatattgatgattaaactatacttattctATTGCCTACAGTAGACTGTAAAGCTTCCAGTTCATTGAATAGAGTTAAGACGTGCTGTGTGTAAAATTGTGACTGACAATCCATTGATTTCTGTTTCCTTGTCTTAATTCCATTCAATCAACTGGCatcttttgtgtttctctggtCTTGGCTGAATCAGAGGTCAGCAATACTCTAGAAATGGGACCATGGATTAATTATCaatattcattcaattaatcACAGAATATTATACTTTTGAAAGAAGAATGCAGATAATTTCCTCAGCGAACTGTATTTGATTTGTGAGTGGATCTGTAGGACCTCTGTGACCCACCTGTCCGTTTTGCCTTtttcacactgtactgtaatgtctTTACCACAAAGACGGCTCAAATGAATTGGACAGATCTCACTCCCTATATCAGATGCTGTCGATATTAAACTCTTCACCTGTACTGCTTGGTACGCTGCCATGAAAATTTCAGATGCTTGATGTGTTGATATATGAAGTGACTGTTCATTTTATGAAAGCTGGTGCTAAGACATTTGTTACTGTAGTTTGTAATTGTACATTTAGTGCAGTGTGAATCACCAGCCATGGTTAAGtgtaaaagtgttttatatttcttaatattgTATGTTATAATATTTCTTACAAAGCAcaatattatatgtatgtaataatgTATCTATTGCGTATTCCAATGCAGTGCAAtgcatattaataatgaacCATTTAGAAACATGTAGCCAGGACAGTCATTTTGCAGATGAAGTCAAATAAGTTGACGTCGCATTTCTGAAAAGCAGGAACTTCCTGTTTCACAGTCGAAATGTGGGAAACTAACCAGAAGCATAGCATAGTGAAAGTGCAGGGTATCTGGCTGAGAAACTGGTTACCTAAAGCTATTTAGACAAAACCTGACTATACCAATCAATATGGTGccttattgtaaaataaaagacTAACGAGCAACAGAAGTGTCAAAACAATACGACGTAGACCTGCTCAGCCCAGACTGTAAGATGACGACAGACTTTATTTAACCTTTCAGCCTTCATTGTGGAAACCATTCCACCACTACCATTATATCCTTATTTTGTATAACAATACAATGTGTTATAATCTGAATATATTGGACAGTACAATAGGAACTGCAAGGTTTCAAGATTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152015 lncRNA downstream 37892 5933658 ~ 5937833 (-) True G121288
TU151999 lncRNA downstream 101589 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 114083 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 747594 5227674 ~ 5228131 (-) True G121188
TU151836 lncRNA downstream 838719 5128038 ~ 5137006 (-) True G121152
TU152141 lncRNA upstream 230962 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 297845 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 402810 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA upstream 402810 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA upstream 402810 6382433 ~ 6385919 (-) False G121443
AMCG00002164 mRNA downstream 72652 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002166 mRNA downstream 92014 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002157 mRNA downstream 148200 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 189693 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002155 mRNA downstream 688943 5264007 ~ 5286782 (-) True AMCG00002155
AMCG00002173 mRNA upstream 54221 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002172 mRNA upstream 126567 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002177 mRNA upstream 267643 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002178 mRNA upstream 278424 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002185 mRNA upstream 378034 6357657 ~ 6381431 (-) True AMCG00002185
TU151612 other downstream 1755848 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2189181 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2259473 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2847781 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 2970808 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1856872 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3852288 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3862472 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5545270 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5688132 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile