RNA id: AMCG00002169


Basic Information

Item Value
RNA id AMCG00002169
length 5000
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00002169
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6109219 ~ 6120051 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGCCGGTGGAGGTCTCTgcgagtgtgtcagtgttccGCTATGGCTACATTTGTGACTTGCTTGTCTTTTTTCTCCGTCTTATTGCATTTTTCTGCTGCTGTGTTTGAGGATCAGGTCGGCAAGTTCGACTGGAGGCAGCAGTATGTTGGAAAGGTGCGTTTTGCCTATTTTGACACCCAGACGCAAGCATCCAAAAAACTGCTGTTGGCCACCGAGAATAATGTCATCGCCTCCCTCAACTCCAGGAATGGAGAGATCTTCTGGAGACAGGTGGACAAGGCTGGCCCGGAGGGACACATTGACACATTACTGGTTCATGGCCAAGATGCTATAATGGTGACTGGGAACGGACGCTTGCTGCGGTCCTGGGAAACCAACATTGGAGGTCTGAACTGGGAGGCTGTGCTGGACACTGGCAGTTTCACGTCCGCTGGTTTCGTGGGGCTGCAGGATTCGGTGAAGTACGTGGCTGTGCTGAAGAAAGGTGCCATCTCCCTGCACTACCTCTCCAACGGCCATCAGAAATGGGTGGAAAATCTACCAGACAGTGAGACCGTGCAGTACCAGGCGGTGTACTCGGGGGGCAGTGGAGAGGTGTTTGTGCTGGGTGTGGTCCCTCAATCCCACCTTGTTGTCATCGCCTACAACATCGAGGATGGCGAGATCATGAAGCAGAGGTCAGTAGACGCACCGTGGCTCTCTGGTCTCCAGCCCGTCTGTGGGGTGGTCAGTTCGGGGATCCTGATGTGTGTGGACTCCTCGACCGCGTCTCTCTACACTTTGCCCTTGGATACTGAGGACAGGGAGGACATGAGTCAAATACTCCTGCAGTCTCTGGATCTGGCCGTTGCCCCTGATTTCCAGCCGGTCATCACCTCCACCCAGCCCAATCCGGCCCGCGACCCCCTGCCCGTTTTCTTCCTGCAGCTAAGTCCCGACCACCACATCCTGCTGCAGCTCCAGGACGGCATCATCAGCTCCCTCCGGGACTTCCAGCCGGCTTCACTGGCATCCTTCGCTACGACCGGGGAGAAGACTGTGGCGGCTGTCATGACACCCAAGAACAACACGGCCTGCAGCATCAACCTGTACTCTGCGGATTCTGGAAGGAGGCTTCTTGACACCTCTGTTACCTTCCCTCAGGACCCAACTGGTGGGCCACCAGAGCGACTCTATGTACAAGCGTTCCTGAAAAAAGACGACTCTGTTGGCTATAGGGTCTTGGTTCAGACTGTGGATCATGCTTTGACCTTTATACAGCAGCCAGGGAGGGTCATGTGGTGTAGAGAGGAGGCGCTGGCTGAGGTCGTAAACATGGAGATGGTGGATCTGCCCCTGACCGGAACCCAGGCCGAGCTGGAAGGAGAGTTTGGCAAGAAAGCCGACGGGCTGCTAGGGATGGTACTGAAGCGCCTGTCCTCCCAGTTCATCCTGCTGCAGGCCTGGCTCGCCCAGCTCTGGAAGCTCTTCTACGACGCCCGTAAACCCCGCAGCCTGGTCCGCAATGAGGTCACCATCGAGACGCTGGCCCGAGACGAGTTCAACCTGCAGAAGATGATGGTGATGGTCACGGCCTCCGGGAAGCTCTTCGGTATCGACAGCAGGTCGGGCGCAGTGCTGTGGAAGCACTACCTGCAGAACGTGCAGCCCAACGCCGCCTTCAAACTGATGGTGCAAAGGACGACCGCCCACTTCCCCCATCCCCCACAGTGCACTCTGCTCATCAAGGACAAGGAGTCGGGGCTGAGCACTCTTCATGTGTTCAATCCAATTTTTGGCAGAAAGAGCCACATCACCCCTCCTGTCCTGGGACGTCCCATTCTGCAgtcactgctgctgcccctCATGGACCAGGATTATGCCAAGGTCCTCCTGCTTATCGATGATCACTACAAGGTTACAGCTTTCCCCTCCACCAAGAAcgtcctgcagcagctccaggaGATGGCCTCCTCCATCTACTTCTACCTGGTGGACGCTTCTCACGGCCGCCTGTCTGGTTTCCGGCTCCGCAAGgacctGTCCACAGAGTTAATCTGGGAGGTGGTCATGTCTGCTGAGGTGCAGAGGATCATGGAGGTGAAAGGGAAGAGAGCCAATGAGCACGTCCATTCGCAGGGCCGCGTGATGGGAGACCGCAGTGTGCTGTACAAGTACCTGAATCCAAACCTGCTGGCCGTGGTGACGGAGAGCACCGACTTGCATCAGGAGCGCAGTTTCGTAGGGATCTTCCTGATCGACGGCGTGACGGGGCGCATCATCCACGAGGCCGTGCAGAGGAAGGCCCGCGGCCCGGTCCACTTCGTCCACTCCGAGAACTGGGTGGTGTACGAGTACTGGAATACCAAGGCCCGCCGGAACGAGTTCTCCGTGCTGGAGCTGTTCGAAGGGACGGAGCAGTACAACAGCACCGCCTTCAGCTCCCTGGACCGCCCGCACCCTCCACATGTCCTCCAGCAGTCCTACATCTTCCCCTCACCCATCAGCACCATGGAGGCCACCCTCACCGAGAAGGGCATCACGAGCCGGCACCTCTTGGTGGGGCTGCCATCTGGGGCCATCCTCTCCCTGCCCAAGATGTTCCTGGACCCACGCAGACCAGAGGTGCCCTCGGAACACAGCCGTGAAGAGAATCTTATCCCCTACGCCCCAGAGATGCCAATCCGCTCAGAGTGGTTCGTTAACTACAATCAGAGCGTGTCCAGAGTGAGAGGGATCTACACGGCCCCTTCTGGCTTGGAGTCCACCTGTTTGGTGGTGGCGTACGGCTTAGACATCTACCAGACGCGGGTCTACCCCTCCAAGCAGTTCGACGTGCTGAAGGACGACTACGACTACGTGCTGATCAGCAGCGTGCTCTTCGGCCTGGTCTTTGCCACCATGATCACCAAGAGGCTGGCCCAGGTCAAGCTGCTGAACCGTGCCTGGCGGTAAGGGGGCGGTGCCGTGGCCCGGAGACCCCCGCCACCGCTCTCCGCCTCTTCGTACCCGGCACTGGGATTGCTTTAGGACGGTGGTTTCCAGACCCATTCTCTGTAGATAACGAAGTGTCCGGGTTTTCCTCCCAACCAGAGCCGTTCGTCATTGAATCATAACAATCCAGTGAATCTGGTAACTTCTCGTGGTGGTTGCCACCTGAAAGTGCTTTTCCCCTACAAGtgatgaataaataactaaacagtGATGTAGTGTGACCTTACACACTTCTAGAATTTAGAATTAACCATAAACCATCTATACATACTCAatgaatttgaatattttgttaTGCTGTACCCTTTTCCTTTAATGCATTACCAGAAAGAATATCGTTGTAAGTGCAGGAATATTTTACACATCAGACGGGCAGaatggtgtttaaaatgtagtgaCATTTACTACATACTAGCAGTGTTCACTATATCCATCCATGAGGGCTTGTGTCTTATTGGAAGATTCGggtctttttctgtgtgtttcttgtaTGTGTTGTCCATTTCGGTTTGGCTCTGGTTGAGGTGGAAGCTGTAGGAGATTTTGTGGTCTTGTGATCACGGAGTGGGCTGCCAGTGGACACAAAAAGGTGGTGGTTGGATAGATGACCACTCGAAGGCCTGGTTtctgcacattgttttgaaatgtgcagGATCCTTTTCAATTGATGCgcacactttttgtttttgtttttaagtctaAGGAAAATCAATCTTCTAACTTGACAACTGAGTTAGTTTAACTATTTATTACACGATTCTGAATTAAAAGGGTTCTTCTAGATCTAAATTGGTGTCCTAAAAAGTTTTGGATGGATCTCAattcctttcattatttttaaaaagtgctgtTTTAAGCCTCAGAAATGTTCTTGGCTTCCCAAAAGTCAGCTGTGCACTggattttgtcttatttttgtatttatttaaaatgtttaacttgAGGCCTGGCTGCTCAGTACACTCATGTTCAATAggggaaatgtgtttattaaacatgtaaaatagcATTATTATCTCACACCACCCTACAAATAATCCCAGGGATCTACTCAATTCTAACACCATGTTGCAGATTGTCAGTAGTACAtttcaacaaatacattgaaaaaggtATTCAGATCACtaattttaatgctttttttgtcGTCACGTGTTTGAACGTTGAAAGTTGAAGTGGATTCCAATCTGCATATCTCATTACATTGTCCCGGTAATAACTTATGCTTGACtttatgctttgtatttgttgtaatttACTGTGAACACAATGTGCAAACGTCATGTAATAACATAATTCAGACCTACTATGAAAGTTGATGGTGGGGGAGAGCAAATTTACATTGAGCTGTCGGAAGTCTTCTTAGAGGAAATTAATAATTGGAATGACAACAGGAACAAATAACATCAGTAACACAATATGCAAGCAAATCCagatatacatatttttcctctttaaaagTTGAGTCCTGGAAAACAGAGCAATTGTTGTCAAAGATAACAAAAGCCCTTCCAATACTCTGCAAGAAAGCATGCACTAAGAATTCAATTCAAGTTTTAATTTAGAATATGGACATCACTTCCAAATCCTCTCTCCTCTGGAGTGAATAGCACTTTTACACACCTGCTACTGGCACACTGATCGGATTGGCTGGGAAATCATTCTGACCAGCTGCAGTAGATGGAGAGGTATTTGTCTGAACTGGGTTACTTCTGATTAAACtatgaaaaaagcaaaattatTGGATTTGAATTTTCCACAACATTGTTTCAGTTACTGTACTTCCATAATaggtaattttaattttatttcaattgtaaCTGTTGGGAAATCttaatcaacattttaatgtgAGGCCTAAATACAATAACTTTTTGGGAATACTTCAATAcagaataatttgtatttgttttcgaACGCAGGCTTCTTGAGATGCATACTAAGCACAGGGTTAAAATTGCTCCGAGCtaatgtttgtctttgttgACCAGtttgattgaaaataaaacccatttcCATCCACA

Function

GO: NA

KEGG:

id description
K23562 EMC1; ER membrane protein complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 538972 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 833296 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 881120 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 904605 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 906757 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 157467 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 207146 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 672925 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1441015 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1526667 7646718 ~ 7648316 (+) True G121688
AMCG00002170 mRNA upstream 4665 6100903 ~ 6104554 (+) True AMCG00002170
AMCG00002165 mRNA upstream 133874 5972871 ~ 5975345 (+) True AMCG00002165
AMCG00002162 mRNA upstream 136372 5962197 ~ 5972847 (+) True AMCG00002162
AMCG00002163 mRNA upstream 147025 5939885 ~ 5962194 (+) True AMCG00002163
AMCG00002160 mRNA upstream 171160 5919626 ~ 5938059 (+) True AMCG00002160
AMCG00002168 mRNA downstream 502 6120553 ~ 6168690 (+) True AMCG00002168
AMCG00002171 mRNA downstream 51028 6171079 ~ 6173906 (+) True AMCG00002171
AMCG00002175 mRNA downstream 80811 6200862 ~ 6207882 (+) True AMCG00002175
AMCG00002176 mRNA downstream 96330 6216381 ~ 6226830 (+) True AMCG00002176
AMCG00002174 mRNA downstream 109085 6229136 ~ 6242079 (+) True AMCG00002174
TU151873 other upstream 885721 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2569665 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2572791 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3149744 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4168403 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 466603 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 466603 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1273749 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2633675 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3724229 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile