RNA id: AMCG00002171



Basic Information


Item Value
RNA id AMCG00002171
length 1053
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00002171
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6171079 ~ 6173906 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAAGGTCTGGGTCCCCAGTGGATTGGCTACAGTTTCATCTCCACAACATCTGTGACATTTCAATGCCTAGTTCTATTCGTCTCAATGAAGCCACTACCACCACAGCCAGCTCAGGTCACAGTCAGCTCCGGCCACATTGTGTCGGCTGCGCTGGAGCTGCTGTACCTCCACCCGGCGCCCCTAGGAGGCAGCACCGGGGCGCACGGCCGCCGCACGGGAGTCTCTCCGCGAAGAGAGGAGGCGGACGCGACCGGGAGGCACTACAGCATCAGCAGCGCCGAGGAGCGGAGCCTCACAGCCTCACAGCCATGGATGCGCCAGCAGCCCCGGGACCCGGGCTCGTCTGCGTCTGACGCCTCGCCTTCTGTGTCTTCTggttccatccatccatccatccatccatcacaGCAGCCTTTTCTCATCGCTGGAGCCGAACAGAGCATTGGGGCTGCTGCCCACACGCAATGGCTGCACCAGCTCCATCCGCATCGCCTGCCTCCGAAAAGCATGAACTCGCTGCTCTTCGGGGAGCTGTCCCAGGCCGCCGGGGTGGCCGTGGTGCCGGTCAGCGCAGCCCCGGCCGGCGGCTCGGGCACGGCGGTCACCAGCGCCCTGCGCAACGACCTGGGATCCAACATCCACGTCCTGAAGACGCTCAACCTGCGCTTCCGCTGCTTCCTCGCCAAGGTGCATGAGCTGGAGCGCCGCAACAAGCTGCTGGAGAAGCAGCTGCAGCAAGCCGTGCAGGAGCAGTGCCGCTACCGAGCGCTGTACACCCGGGAGCAGGCGGTGCAGACGGACTTCACGTCCCCGGAGCACGGCGTGCCGGTGCCGCCGTACCTGCACTCTCGCCTGCCGGGCACCATCTGGAGCTTCACGCACGTCCGGCGGCACGGAGAGCGCTTCGAGACGCTGCAGGGGCCCGGCGTGAGCTGGACGCACCCGGACGGGGTCGGGGTGCAGATCGACACCATCACGCCGGAGATCAGGGCGCTTTACAACGTGCTGGCCAAAGTCAAGCGAGAGAGGGACGAGTACAGGAGAAAGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151928 lncRNA upstream 600832 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 895156 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 942980 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 966465 5202849 ~ 5204614 (+) True G121178
TU151862 lncRNA upstream 968617 5201402 ~ 5202462 (+) True G121176
TU152159 lncRNA downstream 103612 6277518 ~ 6277900 (+) True G121402
TU152177 lncRNA downstream 153291 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 619070 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1387160 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1472812 7646718 ~ 7648316 (+) True G121688
AMCG00002168 mRNA upstream 2389 6120553 ~ 6168690 (+) True AMCG00002168
AMCG00002169 mRNA upstream 51028 6109219 ~ 6120051 (+) True AMCG00002169
AMCG00002170 mRNA upstream 66525 6100903 ~ 6104554 (+) True AMCG00002170
AMCG00002165 mRNA upstream 195734 5972871 ~ 5975345 (+) True AMCG00002165
AMCG00002162 mRNA upstream 198232 5962197 ~ 5972847 (+) True AMCG00002162
AMCG00002175 mRNA downstream 26956 6200862 ~ 6207882 (+) True AMCG00002175
AMCG00002176 mRNA downstream 42475 6216381 ~ 6226830 (+) True AMCG00002176
AMCG00002174 mRNA downstream 55230 6229136 ~ 6242079 (+) True AMCG00002174
AMCG00002184 mRNA downstream 110639 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002183 mRNA downstream 113311 6287217 ~ 6296247 (+) True AMCG00002183
TU151873 other upstream 947581 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2631525 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2634651 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3211604 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4230263 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 412748 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 412748 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1219894 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2579820 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3670374 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile