RNA id: AMCG00002172


Basic Information

Item Value
RNA id AMCG00002172
length 699
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00002172
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6106190 ~ 6108484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCATTTCTCTTCACAGTCTCCTTAACCAAAACCACAAAGAAGGGATTGGAATCCAAGCAGAATTTAATCGAAGagCTGCGGAAATGTGTGGACACCTACAGATACCTGTTCATCTTCTCCGTGGCCAACATGAGGAACAACAAACTGAAAGACGTCAGGACAGCGTGGAAGCACAGCAGATTCTTCTTTGGCAAAAACAAAGTGATGATGATTGCATTGGGAAAGGGGCCTGCAGATGAATACAAGGACAATTTACACAAGGTCAGCAAGTATTTGAAAGGTGAAGTGGGTCTGCTGTTCACCAATAAAACCAAAGAGGAGGTGAAGGAGTATTTCAGCCATTTCAAGGAGGTGGATTTTGCACGGGGAGGGAGCAAGGCGACTATGGCTGTGACCCTGGACGAAGGTCCCCTGGATCAGTTCCCCCACTCCATGGAGCCCCAGTTGAGACAGCTGGGTTTGCCGACAGCTCTGAAGAAAGGCGTGGTGACTCTGCTGAAAGACCATGATGTGTGCAAAGATGGGGAAGTTCTGACGCCCGAACAAGCTCGGATTCTGAAACTCTTCGGCATCGAGATGGCGGAGTTCAGCGTTCAGATCAAGTGCATGTGGAACTCCGAGACGGGAGAGTTCGACAAGCTGGAGGACGCGGAGGAGGCCGAGGAAGAGGACGAAGAGGAGGGGAGTGATGACTga

Function

GO: NA

KEGG:

id description
K14815 MRT4; mRNA turnover protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152051 lncRNA downstream 126567 5975725 ~ 5979623 (-) False AMCG00002167
TU152015 lncRNA downstream 168357 5933658 ~ 5937833 (-) True G121288
TU151999 lncRNA downstream 232054 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 244548 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 878059 5227674 ~ 5228131 (-) True G121188
TU152141 lncRNA upstream 102101 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 168984 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 273949 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA upstream 273949 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA upstream 273949 6382433 ~ 6385919 (-) False G121443
AMCG00002173 mRNA downstream 20238 6033844 ~ 6085952 (-) True AMCG00002173
AMCG00002167 mRNA downstream 90797 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002164 mRNA downstream 203117 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002166 mRNA downstream 222479 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002157 mRNA downstream 278665 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002177 mRNA upstream 138782 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002178 mRNA upstream 149563 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002185 mRNA upstream 249173 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002187 mRNA upstream 319881 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002191 mRNA upstream 342790 6451274 ~ 6500272 (-) True AMCG00002191
TU151612 other downstream 1886313 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2319646 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2389938 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2978246 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3101273 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1728011 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3723427 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3733611 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5416409 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5559271 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile