RNA id: AMCG00002173


Basic Information

Item Value
RNA id AMCG00002173
length 927
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00002173
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6033844 ~ 6085952 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTGAAGGTCGCGACTGTCCTTGTGTTTCTAATAAACGGATTTGTCTCCGCATCCCAGTATGGAGGGGATCTCCAGCCCTACATGCCGAATGTGTGCGCCGAGAAGGAGCTGACGATGGTGGGACACAGACAGCCATGTGTGCAGGCGTTCACACGCATGGTCAAGGTGTGGAAGCAGGGCTGTGCGGGCCAGCAGTGGTGCATGGGCTATGAGAGAAGgACTGCCTATTACACGGCCTACAGACAGGTGTACAGGAAGGACTATCAGACGGTGTACAAGTGCTGTCCTGGGTGGTCCCAGCTCAACGGGGAGGCCGGCTGCCTGTATCCCCCAGAGCGGCCACCAGTTTACCCAGCTGGTGTGCTGGTGGTGATGGGTACCACGCAGGGAAAGCACACAGGAGCCAGGCCTGAGATTAAAGGCTGgcaggggCGCGGCCAGCCCGGCCAGCGTGCTCTGGCGGTTGCCTTGTCTTCTCCACGGCCGcTGTTTGCAGTTACGGGGTCTGCTTCAACGGGGGCCAGTGTGTCGAGGGCTCCTCACAGCTCTGCCACTGTCCGGCAGGATTTAATGGGGCTAGCTGCCAGTATGTGGTCAGTGGTCACAGTAGCCCCGTGGCAGTGGGTGGAGTATGGGCGGTATAAGAATCTCTTCATGGCCAGTGCCCTTGGATCCGGTCCGTATCTAATACGTCTTAGTTCCAAAGCTGAGTTTCACGGAGGCCCTAACGGctggagaggaaggagagaggagagatatTGGTACGGCTCAGCCAGGCTGGGGACACGGGGGGCGAGGTCAGAACTGGCCTTCACAACCAATCAGCTGCAACCTCAAGTGCTGAGACGCGTGAGGGTCAGCACGCTCCTGGGTCCCTCGGGGCCCATGGGACCTCGGGCGCAGGAGCCTCCCAAACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152051 lncRNA downstream 54221 5975725 ~ 5979623 (-) False AMCG00002167
TU152015 lncRNA downstream 96011 5933658 ~ 5937833 (-) True G121288
TU151999 lncRNA downstream 159708 5871668 ~ 5874136 (-) True G121274
TU151991 lncRNA downstream 172202 5858001 ~ 5861642 (-) True G121271
TU151881 lncRNA downstream 805713 5227674 ~ 5228131 (-) True G121188
TU152141 lncRNA upstream 124633 6210585 ~ 6213660 (-) True G121384
TU152160 lncRNA upstream 191516 6277468 ~ 6277902 (-) True G121403
TU152207 lncRNA upstream 296481 6382433 ~ 6385919 (-) True G121443
TU152212 lncRNA upstream 296481 6382433 ~ 6385919 (-) False G121443
TU152214 lncRNA upstream 296481 6382433 ~ 6385919 (-) False G121443
AMCG00002167 mRNA downstream 18451 5978478 ~ 6015393 (-) True AMCG00002167
AMCG00002164 mRNA downstream 130771 5888490 ~ 5903073 (-) True AMCG00002164
AMCG00002166 mRNA downstream 150133 5874782 ~ 5883711 (-) True AMCG00002166
AMCG00002157 mRNA downstream 206319 5804842 ~ 5827525 (-) True AMCG00002157
AMCG00002158 mRNA downstream 247812 5760834 ~ 5786032 (-) True AMCG00002158
AMCG00002172 mRNA upstream 20238 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002177 mRNA upstream 161314 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002178 mRNA upstream 172095 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002185 mRNA upstream 271705 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002187 mRNA upstream 342413 6428365 ~ 6447619 (-) True AMCG00002187
TU151612 other downstream 1813967 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2247300 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2317592 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 2905900 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3028927 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1750543 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3745959 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3756143 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5438941 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5581803 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile