RNA id: AMCG00002179


Basic Information

Item Value
RNA id AMCG00002179
length 2625
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00002179
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6356405 ~ 6360644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCGCTCTCAACATGGCCGGGGAGAAGTTCGTGTTGGAGGGGCGAGTGAGTCTCACAAGCTTCGGGCTGGGGCTCGGCGCGGTGCTGCTGCCCGTGCTGGCGGCGGCCGGCTCGCACATCGACTGGGTGCAGCACTACCTCACCGGCACTCACGGCAAGATCGCCATAACCGTGTGTATAGCGGCGGTGAACGgcgcgctgctgctgctgcaccggGGGCCGCTGTATAAGgTTGCAGTGAGAGCCTGCTTCCTCGGCTTTGCCTTTGGCTGTGGCTTGCTGGTGAGCTTTGGCCAGACGACGTGGAGACACTTCGGCTGGTACATGTGCTCGCTGTCCTTCTTCCACTTCTCCGAGTACCTGGTGACGGCCATCATTAACCCGCGCAGCCTGTCCCTGGACTCCTTCCTGCTGAACCACAGCCTGGAGTACACTGTGGCGGCCGTCTCCTCCTGGGTGGAGTTCACGCTGGAGAAGATGCTGCTCCCAGAGCTCAAGCAGCTACGCTGGCTCAGTCTGGCCGGGCTGCTCATGGTCCTGTTTGGGGAGTGCCTGCGCAAGTCCGCCATGCTGACCGCCGGCTccaacttcaaccacatcgtcCAGAACGAGAAGGCAAGGACCCACGTCCTGGTCACCAGCGGCGTCTACTCCTGCTTCCGACACCCCTCCTACGTGGGCTGGTTCTACTGGAGCATCGGCACGCAGGTGATGCTGTGCAACCCGGTGTGCGTGCTGGGCTACACCCTGGCCTCCTGGCGGTTCTTCCGGGAGCGGATCGAGGAGGAGGAGATCTCGCTCATCCACTTCTTCGGTGAGGAGTACCTGGAATACAAGCGCAAGGTCCCCACCGGCCTGCCCTTCATCCCCGGAATCCGAGTGGAGTCGTAAGCGGAGAGATGGGAAAACGCGCACATATCCTCTACAGACTGGCGCCGCAAGAGGAACGGTGGTCGTCTGGCCAAACCACGGCTCGGCCCCTTTGCCACTCCGAGGGccgagggtgggggggggcagcggCACACTTAGACACCGGGCGCATCCTAGAGCTCCCCACGCCAGGGCCCCACACCACACCAAAGCAGGGGTGGGAGAGCTCCGCCGCGGCCGCGCCACGCCTCTCTCGCCGCCACACACCGAATCCATCGCACCGGccgctttttatttgttttcataaccCAGATCCTATCGCTCCCTAAGGACGCGGGATTCAGTAACCGGAGACCCTGTTGATTTCCCCCCCCCGTCTGTCCGTTTGCGTGTCTCTCCTCTTCGCCGTCTTGGTGTCGTCCGATTTTCTCCCGTCGTCCATCTGCGTCGGACGTCCATCTCGACTTGCGTAGTCGTTGGAATTGGAAACGACGAACTCTCGATTGTGATCGGGAAAAACAAACGCTAAGCTACGTTTCATTTGCAGTCTTGTAGCGTTTCTTACCCTGGAGTTCTTGAGCTCTGaactgtgagtgtgtatgtatgtgtgtaagtgtgtgtgtgagtgagtgtgagagactGTGTTGGGGGAGGGAGGTTGCCGTTCAGTTCGCTGCTGTGCGTTTGCTCTGTTGTCTCCCCGTGGTTAATCTCGCACTCGGCCGTTTTCTCTCTTCACGCCGCTCTGTTGCATCGAACTATGATTTGCTTTGAATtacacattgtaaaaaaaatgacaatcaaAAGAGGGGGGGGAACAAAAATGTTATCCACACTTTAATTTGcaaaagttttctttttaaagaggTTTCTGTTCAAAAGCTGCTGTAATTTCCGAACGGTAGATGTAGCAATTGGTGACTTTCACAAACCACAAGACCCATCACTGTTTTCCTGTTGGGATACGCCGCTCACAGGGACTGTTAGCCGCTCTCCAGTTTGGCTTGTATGTAGTTTTCGGTTCGTTTTAATGCCTGCACCGGTAGCCCTCTTTTCATTGGCTGGTAGAGAGATTCTTCACGTCCAATCACAGTCTGTCATGCAGTGGACCAAAGGCACCTGATCTTTTTGCACATTCACATATCTGGGACACATTcttgctttataaataataactaagtAATTGTCTTCTTTACAAATTAGTTTTAGTCCACAGTAAATGTTTTGCACCATAGTAAAACAGGGGTGGGGCAGTAAGTAAGTGCAGGTGATGTCCAAGTCATGGGATGATtgttcccccctctcccctcccttccctctctctcctccacctcTTTGCGAATGCGAGATTGAAGCCGATATAAATTGGCCAGACTCCTGAAGCACGGCTGCTTTCGGACGTTTGCAGACTCGGGTTGATTTGTACTGATGCGGCAATACCCCTTGCATGTGGGGGGGGTTTACTGTTGCTTCAGAAAAGAAACTCCgatctccctctcttctctccccaCCTCCCGTCTTCATTCACCGGCTCCTGGTTTTCAAGCACTGACGCCGTTTCTCATCCTACAGAAATGCAATCCATCGTCTCTTCTTAGCCCAGGTgtgatttgtaaatatttacttaattggaAGAGTTAtattgtggttttttttttggtttttttatatattgtattttaatatttggagATTCTTGAGTGAGGAGGTGGGGATGGATGGCAAATAAACTTGCTTGGATTATTAAACTCTCA

Function

GO: NA

KEGG:

id description
K00587 ICMT, STE14; protein-S-isoprenylcysteine O-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 28924 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 78505 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 786158 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1080482 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1128306 5227674 ~ 5228099 (+) True G121187
TU152324 lncRNA downstream 432332 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1200422 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1286074 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1469163 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1549914 7910558 ~ 7917243 (+) True G121741
AMCG00002181 mRNA upstream 11205 6326884 ~ 6345200 (+) True AMCG00002181
AMCG00002180 mRNA upstream 31846 6316286 ~ 6324559 (+) True AMCG00002180
AMCG00002183 mRNA upstream 60158 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002184 mRNA upstream 70844 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002174 mRNA upstream 114326 6229136 ~ 6242079 (+) True AMCG00002174
AMCG00002182 mRNA downstream 22411 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002186 mRNA downstream 42266 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002188 mRNA downstream 159865 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002189 mRNA downstream 176437 6537081 ~ 6553474 (+) True AMCG00002189
AMCG00002190 mRNA downstream 226277 6586921 ~ 6588615 (+) False AMCG00002190
TU151873 other upstream 1132907 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2816851 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2819977 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3396930 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4415589 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 226010 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 226010 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1033156 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2393082 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3483636 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile