RNA id: AMCG00002180


Basic Information

Item Value
RNA id AMCG00002180
length 3762
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00002180
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6316286 ~ 6324559 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAGGTGCACGGTGCTAACAGGATGGCGGTTCTCTCCTGGTGTCGGTGTGCCACTCTGCTCCTTGCCACGTTGGTACTCTCGGACAGCGCCGAGCCCGGATCTAGAAACGTGAAAAAAGCCCTGGCCCAGCCCGCTCCCGGGGGCACCAATACCCTCCAGTCCCTGGAGTTGTGGCCCCAGCGGAGCGGACAACATCGCCGGCATGGGGGGCGCAAAGACAAGGCCAGCGCCGGGCTGCTCTCCCGGGGAGCGCCGCAGCTGCAGGGCCGGCCCGAGGACGACGGGATGGGCTTGGAGGGGCTCAGCCCGGTGAGGCTGGAGATGGGCCCCGGGGAGCGGAGAGTGGGCGCCGGGGAGCGCAGAGGGAGCACGGGGGATGCCAGCTTTCTGGGTTTCGGGATCCCCTTCCACGAGCGAGACAACCACCCCCCCGGCAGCGAGGGAAGCCTGAAGGGCAGGAGACACGGCCACCACCTGGAGCACAAGAAACACGGAGGGAGGAAGGACAAAGCCAGGCACGCCAAAGTTCGACTCCCCGAGCCAGAGCTGGGCTCCGTCCTGAAGGAGGGCGAGGTGTTCGAGGAGCAGCCCCCCAGCAAGCCTCCCTCGGAGAGCGCCGCGCCCCCCACCGCCGAGCCCACCCCGACCCCCGGCGTCAGCCCCAGCACCTTCCTGGTCACCACAGTGGCGAGGATCGAGGAGCTCCCGGTACTGCCCCCCGCCTCCACGAAACCACAGagaaTAGGCCACAGCCGGGCGAGGGCACAGGGTGAGGTGATGCCCACCTTGGACATGGCGCTCTTCGACTGGACAGACTATGAGGACATGAAGCCAGTGGACACCTGGCCATCTTTAAAGAAGAAAGAGAAACGGCGCAGCAAGAACCTGAGCAACGTCAATATGACCGTGGAGTCGGAAGCCATGGCCGAGCCCTGCGATCACCACCTGGACTGCCTCCCCGGTGAGTCTGACTCGGGCCTGCTGCCTCAGGCCAGTCCCCTGCTCCTGCACCGGCCAAGCTCCTGCTGTGACCTGCGCCAACACGTGTGCAAACCACACAACCGCGGGCTCAACAACAAGTGCTACGACGACTGCATGTGTGAGGAAGGCCTCCGTTGCTACGCCAAATTTCACCGCAACAGGAGGGTGACCCGGAGACGGGGCCGCTGCGTGGACCCCGAGTCGGCCAACAGCGATCAAGGGTCATTCATCACCGTCTGAGAGAGCGGGGCAGATCCACACAGACCCCACGCACCCACACAACCGAGTGGAGAGAGGGCGAGGAGAAAAAACGCaaacgacgacgacgacgacaaCACAAATCAACCCGGGTTAACCgaaccttttttatatatttactttcaaTCCAGTCgaggattttgtttattttctgattcaGTGCACCcagatttcagaaataaatcgGTTGCTGATCACGACAGCTCCCATAGGTGTAACCTGGCTGTAAGTATGACAAAGTTGGAGGCTGCAAAACGAAATCACTTTTCTTAAATGTGTATgctaattttgttaatttatttaagatgTATGAGGCGTGTCTTAAACTGTATCTTTGTAAAACAGCTGTTTCTGCGTTTGTAGCGGTAAGAAAGGGAGCACAACAAGAATGCGTTTTATTTTACTCCCCCACTTCCTGTATGACTGGTAAATATAAAAGTGCTGTAAATAACTTCACAGAGGGACTCTTTTGTACAGTTATTAACAGGGTGCTAAGCTTGCTGTTGCCTTTGCTGTTTGTTCTATGATCTCCATGGACTTTCATCTGATCCTTCAAGGCAGCTTTCAAAGGTTTTACCACCAGTTGTTGCTACAGaacgtttttcttttctgattggcctttgtgatttttttgttaagTTTCTTGTGGTAttctagtattttttttttaccctcaGTGGAAATTTGTGGTCAACACATACTGAATAAAGTATTACAAGCTCCTTTCCCTTTCATTTTAGGGTTAAAGCATCATGGCCATTTGACTTCTGTTGGAGAGCAAGCAAGACCATGAAAATGATCGATTTTAACTGGCCGACAGGAGCTGTGATGCTCATTGTGTAGATATTGCAAACCTGAGGCAAGAATCCCCTGACTACATTCCCCACAATCCCCTGTAGAATCGCTCTCATACAGTCACAATAATGACGCATGAATGCAAATCAACTTTAGGGAATTATTAAAGTGATATTAGCAGGATCTTTTACAGAGACACTTTTGGGATTTTGGGGAATTGGACACCAAGGGTTAACCTTACACAGCATTTaagcaaaaacataattacatggTTGATTCAGCTTTTACGAGTACATCAGCAGTGTGTTACCGATCCATACGCACTATCGATTTGACAAAGTGTTCTGCATCGTTTACTTTCCAAATCAGATCTATAGATCTACTGAACTATTGACCTTTGCCATTTTGTCACGGCCTCAGGTTTTGATTTGCTATCTCAAGTGAATGGCTTGATTAATTTCCCTTACCAGGCAATCAATAACTATGATACAGATGTGATTAAGGTTCTTTCATTTGGGCCCTTTTATGCTTGGGTGAAGGCCGGCTGAGTGTTGAGGGGGGGAAATAATCAGATACTGAAAACCCAGCCTTCAGACTTCTGTTATAGCAGGATCTCTGGGGCTGGGCCACATCCAGAGATTGAGAGCCTGTTTCCAAAGCACTACATCTGCAGTTCTGATATCCTATTGAATTATTCAAGTGTAGGAAAGACTATATTATGAGGCACACCGAACGATTGTCACTTTTTTACACCATATACATGCACTTCTTGTCTGATCACAGTGCAGGTGTTTACTGACAGCTTTACTGATCTCACCGGTCCCATTTTTAATGACCTTGGCGTGTGTTTGTGGCCGACTGAACGTGCAGTATCGACCAGGCATTGGAGTTGTAATTTCAGACAAGCTAAATATATTGACCAAATGATTCTGTGTCGTACTTACTTCTCTGTCTCGGATGTGCAAGGATGCAATCGCTGGCCGAGATATCGATTGTCGTTGGGGcactaaaagaaaaagcattaaCTACTATCCATTCTGTTTGTAGATTTCAGAGGAACAGCGGTGCATACTATACTATTTGATAGGAAAAGAGTAGTGTGCGTCCTGTAGAAAACAGTAGACCTTGAGAACAAAGACTAATGACAACCTAAAGGATAGACCAGAAAGCCAAGGATCTCCATATTCTGTTTGAAAATCATGATACACGTGAAATGACACTGACATCTTTATGTGGTTTAAACACGCTGTAAGACACATTCATATACCCGATATTCAAGTAAGTATTCCAGTCTTTGTATTATCCCTTTCTTCTGAAAGGTTTGTATTGTCCAGACATGCATTTGGAGGCTATCAGGTGCTCACAGAAAGGACCGGTCCAACGCAAGGAAGCCCTGAGACTGATTTATATCTGGCATCGCTGCAAGTCAAATCCTGCTGAATCCCAATGCCAGCCACTGCAGATTTTTACTGACAACCTTTATACGTTTCTTGGCTTGCCGTCACTCCAGTGTGGGGCCAGTTCAGCTCTTTTTACTGTTGTAATATAGCTGCAAGGTGACTACTTGTAATCCAGTTTGAACTTAAAACACGAAGGAAAtggatgaaaaaagaaaagcgaaTCACTAAGAGTTGTGCGTTCTGTGCTGTTCTAGTCTAGGCGTTGTGATGTGCTGCATGTGTGTATTCCCACAGACTGTCGATAATAAAGAGACGATTACTTTTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152159 lncRNA upstream 38386 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 746039 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1040363 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1088187 5227674 ~ 5228099 (+) True G121187
TU151864 lncRNA upstream 1111672 5202849 ~ 5204614 (+) True G121178
TU152177 lncRNA downstream 2638 6327197 ~ 6327481 (+) True G121417
TU152324 lncRNA downstream 468417 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1236507 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1322159 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1505248 7829807 ~ 7834211 (+) True G121722
AMCG00002183 mRNA upstream 20039 6287217 ~ 6296247 (+) True AMCG00002183
AMCG00002184 mRNA upstream 30725 6284545 ~ 6285561 (+) True AMCG00002184
AMCG00002174 mRNA upstream 74207 6229136 ~ 6242079 (+) True AMCG00002174
AMCG00002176 mRNA upstream 89456 6216381 ~ 6226830 (+) True AMCG00002176
AMCG00002175 mRNA upstream 108404 6200862 ~ 6207882 (+) True AMCG00002175
AMCG00002181 mRNA downstream 2325 6326884 ~ 6345200 (+) True AMCG00002181
AMCG00002179 mRNA downstream 31846 6356405 ~ 6360644 (+) True AMCG00002179
AMCG00002182 mRNA downstream 58496 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002186 mRNA downstream 78351 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002188 mRNA downstream 195950 6520509 ~ 6522224 (+) True AMCG00002188
TU151873 other upstream 1092788 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2776732 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 2779858 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3356811 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4375470 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 262095 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 262095 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 1069241 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2429167 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3519721 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile