RNA id: AMCG00002189



Basic Information


Item Value
RNA id AMCG00002189
length 711
RNA type mRNA
GC content 0.60
exon number 6
gene id AMCG00002189
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6537081 ~ 6553474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGTGCGTCGCCGACACAGAGCCCATCTCCATCGCTCTCCGCTCCGCCGCAGACAGCAGCCCCTGGCAGGGTGGCGGGACTGTAAATGAAAAGCGCGTCTCGGTTCTCCCTGCCTCGGTTTCACGGTTTCCCTTCACAGTgaTCATGCGTCCTGATGATGCCAACATCGTGGGCAACGTCCACGGGGGCACCATCCTGAAAATGATCGAGGAAGCCGGGGGCATCATCAGCACTCGGCACTGCAACACCCAGTCTGGGGATCGCTGTGTGGCTGCCCTGGCCCGCGTGGAGCGCACCGACTTCCTGCACCCCATGTTCATCGGAGAGGTGGCCCACGTGAGCGCGGAGATCACCTACACCTCCAAGCACTCGGTGGAGGTCCAGGTCATCGTGCTGGCCGAGAACATCCTCACAGGGGCcaaaaaagtaacaaacaaGGCCACACTGTGGTATGTCCCTTTCTCCCTGCAAAACGTCGACAAAATCATCGAGGTCCCTGTGATCGAGTACTCAAGCgtggagcaggaggaggagggcaaGAAGCGATACGACGCCCAGAAGATGGAGAGGCTGGAGACCAAGGAGAGGAACGGGGAGATCATCAACCCTGTGGTCAGCCCAGAGGCCTACACCGTGGGGTTCAGCCAATCCAGCCTCATCCACCTCGTGGGGCCGTCGGACTGCACTCTGCATGGATTTGTACACGGA

Function


GO: NA

KEGG:

id description
K17360 ACOT7; acyl-coenzyme A thioesterase 7

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 209600 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 259181 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 966834 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1261158 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1308982 5227674 ~ 5228099 (+) True G121187
TU152324 lncRNA downstream 239502 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 1007592 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 1093244 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1276333 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1357084 7910558 ~ 7917243 (+) True G121741
AMCG00002188 mRNA upstream 14857 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002186 mRNA upstream 112818 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002182 mRNA upstream 151299 6383055 ~ 6385782 (+) True AMCG00002182
AMCG00002179 mRNA upstream 176437 6356405 ~ 6360644 (+) True AMCG00002179
AMCG00002181 mRNA upstream 191881 6326884 ~ 6345200 (+) True AMCG00002181
AMCG00002190 mRNA downstream 33447 6586921 ~ 6588615 (+) False AMCG00002190
AMCG00002192 mRNA downstream 82460 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002194 mRNA downstream 160633 6714107 ~ 6725801 (+) True AMCG00002194
AMCG00002195 mRNA downstream 220449 6773923 ~ 6785974 (+) True AMCG00002195
AMCG00002202 mRNA downstream 557303 7110777 ~ 7119186 (+) True AMCG00002202
TU151873 other upstream 1313583 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 2997527 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3000653 3533814 ~ 3536428 (+) False AMCG00002098
TU151290 other upstream 3577606 2956908 ~ 2959475 (+) True G120742
TU151011 other upstream 4596265 1924022 ~ 1940816 (+) True G120518
TU152254 other downstream 33180 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other downstream 33180 6586654 ~ 6602608 (+) True AMCG00002190
TU152502 other downstream 840326 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2200252 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3290806 9844280 ~ 9851306 (+) False AMCG00002272

Expression Profile