RNA id: AMCG00002191


Basic Information

Item Value
RNA id AMCG00002191
length 5853
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00002191
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6451274 ~ 6500272 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACAAGTCCGTTTAGCCACCCGAGGCAGCCGGAGCTAACAGAGCCAAAGGGAGGGATTGTCGTGCCCTAATACAGCAAGAGTGGAAGAAAGAAAGGACCTCTGGCGTAGCCGTTGTTTGCATCCAGTAGAAATCTTGTGAAATACCTGCTATCGAAGGAGAACCCCTTTCCAGAGACATGCCTGCTGGCCGGGATGGCACAGTGTCGGCTGCGCAGCGCCCGGGCGCGGTGTGTGGCAGGGACGGTGCCTGTGGTTGCTGAAGGGCCACTCggcggagagagggagcagcCAGCTGTCGTTTCCCTTCagttttccttcagttttgctCTGCGTCTTGCAGATTCAGGGTGATCACATTCACAATTCTGCTCGGATGCGTCTTGTTATGATGTCTGTGCGTCATGTGTCAAAGCTTTGATTCCCAAactgttttatcatttaaaatattaatccgTATTGTCAGCAGTAGTTTCTGGAGTGAGGATATTACAATGTTGCAGTCTAAgccaatgcatttttatagttaaataaaaatgaataaaggtaCATGAGATTAGACTTGtcatacaaaaaagaaagatctGACCTGCAGAGTTgggtttatttacaatacaacTCCATTTATATTTGACACCAGCCCTGTTTATTGATGTCGCACTGTAACACATACCGGTGCATGTAAAGAAGAGGTGAAAGCAGTTAGCATGGTGGTGGAGAGGGCTCTGCTGGCCGCAAGGCAGGGGGACGTGCAAACCCTGAAGGCGCTGCTGGCGGAGAAGGTGTTGGATGCCGGCGTGAAGGACCCGCTGGGCGCCTCTCCCATCCACCACGCCGCCCGGGCTGGCAAGCTCAGCTGCCTGCGGTACCTGGTGGAGGATGCGGGGCTGCCGGGGAACTGTCTCGCCAGGAACGGTGCCAGCCCCGCACACGACGCCGCCGCCACGGGCAacctggcctgcctgcagtggCTGCTCACGCAAGGAGGTTGTCGGTCAGCgGACCGGGACAGCTCGGGGGCTACAGTTCTGCACCTTGCAGCTCGCTTCGGCCACCACGACATCACAGACTGGCTCCTCAAGAGCGGGGAGGGAGACCCCACCGTATCCACAGACACGGGAGCTCTGCCCGTCCACTATGCAGCGGCCAAAGGAGACCTCCCCTCGCTACGACTGCTCCTGGGACACACCCCGAGTGTTGTCAATGCCCAAACAAAGAATGGTGCCACACCCCTTTACCTGGCTTGTCAAGAGGGCCACTTGGAGGCCATCCAATACCTGGTGAAGGACTGCGGGGCGCAGCCTCGAATTCGAGCCAATGACGGGATGACACCTCTGCACGCCGCCGCCCAGATGGGACACAATACTGTCATTGTCTGGCTGATGAGCTTCACAGACATCAGCCTGACAGACCGGGACAATGACGGTGCCACTGCCATGCACTTTGCGGCCAGTCGTGGCCACGCCAAGGTCCTGAGCTGGCTGCTGCTTCACGGAGGAGAGATCAGCAACGACAGCTGGGGAGGGACCCCCCTGCACGACGCCGCCGAGAACGGGGAGCTGGAGTGTTGTCAGATCCTGGTGGTAAACGGAGTGGACCTGGGCATCAAAGACCAGGACGGCTACTCTGCGGCAGACCTGGCCGAGTACAACGGCTACCCCCAGTGTGCCAAGTACCTGCGCACTGTGGAGAACATGAGCGTGGAGCACCGTGTCCTCTCCCGGGACCCCTCGGCTGACCTGGAGTACAAGCAGCCGGACTCGGGCCTCTCCTCCCCCAACACCACCCTCTCCTCCGCCCAGCCGGCGCGCTTCGACATGGGCTCCCCCTCTAGCACCCTCTCCAACTATGATTCCTGCAGCTCCAGCCAGTCCAGCACCGGGGAGAAGAGGAGCGGGGCCCCCCCAGGCCGCAACCCCCCAGGGCAATCCGAGACGGCCATCACAGACATGCAGACCTACATGGACATGCTGAACCCCGACCTAAGCGCCGGAGCCCCGAAGAAGGAGGTGCTGAATCCCAGAGCCCCTCCCCCCCCGCCGGACTTCCCTCCCCCGCCACCGCCGCCTCCCCCGCCCGCCACGGCCCCCGCGCCGCCCCCGTCGCCGCCCAGCTACCCTGCGCCCAACCCCCCCGACGACCAGCCCTCCGCCGAGATCTACCTGAAGGTGAAGAGCAATCTGCGGCACGTGGAGAACGAGGCCCTGAAGACGGAGCTGACGCCAGGAGACGGCACCCCCGAAAGACTGCGCCGGGTCGACTCCAATAGGAAATCCCGTAACTTCAACAAGCAGCCCAGCACCGGGGATTACTACAAGGCCCTGGGCAGCGACACGGCCGACCAACGCGGGAGCAAAGTCATGGCGCCCAACGAGGAGGTACGGGAGCTGCGGCGGGGGTCCGCGGGTTCCCTGTTGTTGGAGGAGCCAGCGGACAGCCAGCAGAACAGAGCTGCCCAAGAgatgccccccccacctcctcctccgcctctccccgagaGCCAGTCCAcccctccgcctcctcctcccctgcCCTCCGACAGCTCGGCGCCCCAGTACAACATGACCCAGCGCCGGCCGTCCTCCTCCTCCGGAAGTGCAAAGTCGTTCAACATGATGTCCCCAACTGGCGACAATTCGGAACTGCTGGCGGAAATCAAAGCAGGGAAGAGTCTGAAACCAACGCCGCAGAGTAAAGGCTATACAACAGTCTTCTCCAACACCGGGGGGAACAACGCCGAGACCCCGTCATCTCCTCCCCCGACTCCGTCCACGCCCTCCACGGAGCCTTCCTCTCCCAACCCCGCAGCCCCGCCCGGCTCGGCCGCTTCCCCCAGGTCCGACTCCCCCTCCATGCCGGCCCAGGGAGCCGGCGTGGGCTTGGAGTACGCGACCTCCCCGGTGATGAACGGCAACGCGGAGTCCCGGCCCCGACAGGCCAGCCTGGTGGACGTGGAGACGCTGGTGCCCACCCACGACGAGCAGGGCAGGGCCATCCCCGAGTGGAAGAGGCAGGTGATGGTGCGCAAGCTGCAGATGAAGAtgcaggaagaggaggagaacaAGCGCAAGgtggaagaggaggaggcgCGGCTGGCGTCCATGCCTGCCTGGAGGAGAGAGATCATGAAGAAgaagctggaggaggagaaACAAGACGAGGAGCGGatgaagaaagagaaggaggaggaggagaagaccGAGCTGGAGAAGCTACGGACCCTCGGGTACGACGAGACCAAGCTGGCGCCGTGGCAGAGGCAGATCATCTTGAAGAAAGGAGACATCGCGAAACACTAgagccccctcctcccctctctctctctctctctctctcccacctccACTCCACACCGCTACACCAGCACCGCCCGGCCCCTTCTCTCCTGGGCAGGATCGGGGGTGGGAATCCACTTTCCGTACCCTGGCGAGGACTGTAGCTTGATAATCTGAACTGTGAGGGTCTGTGCCGTGTCTTTCGCGGCTTCGCAAGCACCCCCAGCTGAGCACCTGCACACACCGGGGACAGAAACGCCCTTGGCTCAGCGTTGCCCTCCACAGTGCGATCTCTCCATGTCCGTTTACTGCGTGTCGTTGAGTCAGTGCTATACGAAAGCCCTGTAGCGTCTCACTCTGTGTAGGCAAAAGACCTGCttcctaaataaaatgtttccaatTAAAGCAAGAGAACATGTTTGTCCAGTTTCCCTTCAGCCGGGGGAGATGCACTTCTCAGTACTGCTACGTTCATTAACCCGAAGGTGATGCAAATACAGAgctggaattaaatcaaaacgcTGACCCATCCCCGCCAACAGGAAACGACAAACCTGTGCTCAGTGGCGCGGCTTCAATCACCgtcagatttttctttcttctactgGTACACCGGGTGCGGTTAGGGTGGGtcaaagtgttgatttaatcGGGCCCCTAGTCAATTTGAAACCGCTGTCCTCCCCATGGAGAGCAATAGTTTTCTATTCAGGACCGAGTTTGGAAGGAGCTTTGATTGAGTAACCAAATCAAAAGTTAACATCATAAAGAAGAGATTGGAAATCAggatgattgttgttgttgttgtttgtcataGTTGTTTGTTTAGGATGTGGCCCTTGCTGACATATGCtcctgaatatatataatataatctacaTACACACTATAAAGGCTATATATACACTATTGTCAAGGAGAACTGCAATGCAATATAATAAAcagagtatttattttagtaaatcaTTATATATGTTGAATTTGGAACATGACAGAGAAGCTGTCTTGCATTCTAGAGTCTGTATTTTGCCACGAAGGTAGTGGAATTACCCCTGAGATCCGTGTAGCCCTTTGGTCAAGTGTACAGAAGGTTATCTCCTAATGCAAACCTTATCCCTACCTttcttcagtcttttttttaagcctGCTTTCCACAAGCTTCAGACTAGTTAGCATGTCGAGATGCACTGAATCTTGGCAAGCAGTGCACTTGCGGGTTCAGCTCAAATCGAATTCGCTGAAAACATGACAGATTTCATTTACGGAAAGCAGTTACAGGTAAAGACTAATTATATGGAATCATTAGcagattttttaatatatctggATGCAACGTGATTaacttttttaatcttttgattACTGGAAACAAAATGATTGTAACAGACTGCACTATTTCAAACACAGAATTCTGCTCGGTTCTGTCTCTTTATTAGGAAGAAAACAACTGTTTCTGAAGAGAATCCAGATATAGTCTTTCAGTCTTATGAAGCAAGGCAACGTCTGAATATGTCATTAAGAAGACGGGGCCCAAGTTGATTTGGATTACAGCAGGAAGTAATATTTCTATAAAGGCTTTTTCTTGGCTACCACAGGAATCAGCATTTAAGAATCCATTAACCTATATGATCTTTGTGTTCAGTCTGCGTTAAAGTACATGTGTTGTGGTCATAAACGTGATAAAATGGTTTTGGGTAAATTCAGCATCTGCATcaaatctaaattaatatttggttACAGAGGTCAACCAGACTTCTCCAGCAGCAAAAAGGCTGAACTAATGGTGTCCTTCTGTCTTTCAACATTTGTCTGGTCAAAATGTATCAAAGTAACACATGCCTATTATCTTGGGTGAATGAAAACCACGATCCGGATGCAAATGTATCCATCCTTTGTGATTCGTGCACCAGATTTGGATTCATTCATGCCAGGGTTTCACATATCGGTGTCTCGAGCCCTCCTTGATCTGCTGGGGACCGTACTGCTGTGGAGAGGCGCTGTGGCACTCAAAAGAGACGCATGTACAGAAATCTGGTTCCATTTTTCATCTCTGTTTTGGAgtatttttcttacatttttttaattattattattattgttattattattatttagaccAATAACCTGTGGATTTAGCACCTGCTGTCTAGATGCTGTAACCGATCTCCCACTCCCCAGAAGTGAGCCGGATGCGTGTTTCTGAATGTTGTATATCTGGGCTGCTTTTCCTGTGTACTGGCACTAGTGCATTTGCATACTCGACGTGCTTTTGGATGtacatttttgcaaataaaagattatatataaatatataagtatgtgAGAAGAGTgcatggggggggggaagagatgTTTCCTAGTTCAGTAAACATTTGGGAACAATTTAATTCACTTCATTGGATGCCATATTGATGTTGAAAAAGAGGAAGTAAAACAAGTTGTATAACATCATTGCCATTAGCAAATTTtctattcatatatatataaatctatatatatttagattggAACCCTAAACTCATTGTCATTtgtctttatttcctttattatatattttttttcagcctTGCTTATGTAGC

Function

GO: NA

KEGG:

id description
K24047 ESPN; espin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 26976 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 38000 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 43359 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 65355 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 1060805 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 1157560 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 1162714 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1329921 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1515792 8016064 ~ 8017075 (-) True G121789
AMCG00002187 mRNA downstream 3655 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002185 mRNA downstream 69843 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 188969 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 203405 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002172 mRNA downstream 342790 6106190 ~ 6108484 (-) True AMCG00002172
AMCG00002193 mRNA upstream 165842 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002198 mRNA upstream 182760 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002196 mRNA upstream 212725 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002197 mRNA upstream 229362 6729634 ~ 6735812 (-) True AMCG00002197
AMCG00002199 mRNA upstream 285855 6786127 ~ 6792271 (-) True AMCG00002199
TU151612 other downstream 2231397 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2664730 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2735022 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3323330 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3446357 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1336223 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3331639 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3341823 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 5024621 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5167483 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile