RNA id: AMCG00002193


Basic Information

Item Value
RNA id AMCG00002193
length 678
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00002193
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6666114 ~ 6667451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAGCAGCATCCGAATCTCCAGAAAAGATCCATCTATTAAATGGGAAAAAGGTTTCCAAACCTttgatggaaaagaaaagaagagccAGAATCAACGAGTGTCTGGAGCAGCTGAAAGCACTCCTGGAAAACTATTACACCAATAATATTCGAAAGCGCAAACTGGAGAAAGCTGACATTTTGGAATTGACAGTGAAACATCTACGGAATCTGCAGAAATACccacaggGTGCTTCTGTGAAGACCATACAGTTTGCCGAGTACCAAGCAGGGTTCAAGAATTGCTTGAACGGGGTGAACCACTATCTCATGACACACAAGTCCAACAGGAGAATTAGCTCCAGCCTGTTGAGACACTTCAGCAGCAACTCCAGGGCAGCGGCCGGTTCCAGCACCGCGGACAGCGACCCTGGAGCCGCGCAGACTCGGGAGTGTCCGCCGCTCTGCTTCTCACCAAACCCCGCGCCCAACTCCTCCATACCCGCCTGCGGTGCCCTTACAGCTGGGGCTCAACCCGGGCAGCACCACCGCCCCGCCAGACCAGCAGGCCACGTCAAATGTcagctgtttttaaaagacaaatgccCGGGTAACGAGGCGCAAAGCCACCAAAACAGCGCCACCGCCAGTGCGCACTTTTGTGTCGCGTCGCGGAGTTATTGGCGTCCTTGGTGA

Function

GO: NA

KEGG:

id description
K09088 HES3; hairy and enhancer of split 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 241816 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 252840 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 258199 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 280195 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 893626 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 990381 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 995535 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1162742 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1348613 8016064 ~ 8017075 (-) True G121789
AMCG00002191 mRNA downstream 165842 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002187 mRNA downstream 218495 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002185 mRNA downstream 284683 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 403809 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002177 mRNA downstream 418245 6247266 ~ 6247869 (-) True AMCG00002177
AMCG00002198 mRNA upstream 15581 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002196 mRNA upstream 45546 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002197 mRNA upstream 62183 6729634 ~ 6735812 (-) True AMCG00002197
AMCG00002199 mRNA upstream 118676 6786127 ~ 6792271 (-) True AMCG00002199
AMCG00002200 mRNA upstream 130436 6797887 ~ 6824699 (-) True AMCG00002200
TU151612 other downstream 2446237 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2879570 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2949862 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3538170 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3661197 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1169044 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3164460 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3174644 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4857442 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 5000304 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile