RNA id: AMCG00002194


Basic Information

Item Value
RNA id AMCG00002194
length 5111
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00002194
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6714107 ~ 6725801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATGCCAAGATTAGGAATGGGTTTGTGCGTCCCACCCTGGGAGTTAGACAAGAGGTAGTAAATCAgttcctctgtgtgtgtatttgagtTGTTCATCAGATCCGGAGGGAGGACATAAGGGGAGGGGACTTTACAGTACATTATGGAAAGCAAAGGTTTGTCTTAGAGGGAGGGATAGGATTTAGCAAGGTAGCTGTAGAAACATTAGGATAGAGAAAGACGCAATTGTCGCATTTACTATCGGATACTATAATTCTGCTACGAGGCTTGCAAGGAGCGGGTGGATTTACCCCCAGACACTTAAAAACGTAAATAAACTGATGCAACcgatgtttatttaattctttcTCAAGAAGACTTATTTTGCTTAGGTTGCAGGGTAATATTTACGCCACAGAACAAAGGCAAAGTGAACAAAGCGAGTGCCACAAAGCCGAAAGAAGTGAGCGATGCAAGAACCAGAGGCATGCCCTGAAGGAGACAGAGGAAGGTCCGCACTATAATAAACTGCCACCGTTTGCGGCAAGAGTCAGAAACGGAAATGCAACGACGAAAAAGGGAGTTTTTGCAAATACAGAGGCAACACCATGCAAGGAAACCCGCCGAAGACAGCGAGCCGGGATGGTGGTGCAGATGAAGTGAAAGTGCAGCCCGATTGAACTGTTGCGCGCAGAGAGGGTCGCTACAGGCGTTATTAGCGCAAAACAATGCGAGACACAGACAGCGGAAGGAAATGACAAACAATGACAGCCCCGCAATAGTAACTTTTTACAGACTTGATCGGCCCCGAAGACCATTTTAATAAGGGACTGCCTGGCACATACGTAGGACGGGAGATCGCATTATTTGAGACTGGATCCTCCAAATGACAGCTCTGAAGTCGCTTTCTTGATTTTTCTTTCGTTTCGACTCCTCTGCAGCTGAAAAGGCAACCAAACACAGTGCAGGGGCGACTGGGATGCGCTAGTGGGTCATTGCTACACACGCAGAGCTGCGTTATTGCAGTGCGGCTGGTTGAACTGTTATTGCACTGGTCTGGCCAtggggaggaagaagaagacCCTGCACGACTACGCCGCGGAGTTCGCCGACCTGGCCGTGAAGAGGCATGTGGTGGAGCAGCACGACTCCGGGGACAGGACCCTGGTGGAGATCCTCTACTGCAAGTCCTGCGAGATCCCCATGAGGGTCCGGCGAGACCGCATACTCGAGCACCTGGCTTCGGCCCGGCACTACCGAAACCGCCGGCTGGCCAAGCAGCAGTGGGACCGGAAACCCACCCTCATATCGCCAACTGATGTCCACCCCACCATACCTGTGAAACTGGACTCTTCCCCCTCCATCGCCTTGCCATCTCCGCTGATCCTGCACGGCAAGCActgctcctcctcttccagCACGGCCGCCCTCCAGTCCCCAGGCTCCCAATATGCACCGTCGGGCCCGGTCCGCTCCTCCGGCATCACCTCCACCTCCAACAGCAGCTCTGCCTCAGCGCAGGGTGACGCCACACCGTCTACCTCCTCCAGCAAGCCTCAGAGCCTCCTGGGCACACGGGTCAAGAGCCCCACGCTGCAGGCCTGGCCCTCCAGTCCCTGGCTGGTGGTGACGGAGGCGTCTAACAGTGTGCCATCTGGGCGGCACGGCTCCGGAGCTGGGGCACTGGGCAGCCTGGGAGTGGGGCTGGCCCTTTTCGGTGTGGGCTCAGGCAGCAGGGCCCTGTGCCAGTGCCTGGTGGAGGAGAGCGGCTGCCACCTGTTGTACATTGTGGAGGACCAGCGCTGGGAGGTGGAGAGCATCTTCAGCCAAGAACATCTAACCCACACCAGAGTCCTCCGAGCCCTAGACACCGACATTGTGCTCAGTGACCAACGCGTCAGCGGAGTCGTCGTGTGCAGCCCCCCCAACGAGGCCTCCGCTATCGTCCTGGACGCCTTACGAGCAGGTAAAGGGGTGTTTTGTGAGAAGCTGCCTAGTTTAGACAGACACATAGCAGAGTCCTGCTTCGATGAAGCTGACAGACTTggaaaaccactgctgtgtggATTTTACAAGCGTTTTGATCCGGCCCTGCAGTTCTTATACAAGAGGGTCCACGAGAACGACACGCTGGGGAAGATCCAGAGGATATCTGCTGTGAGCCGCCTGTACCCGCGCCCCGCTGTGGCAAAGATCAAATCCTCTGGTGGGATCTTTTATAGCATGGCCGTGCATGACATTGATGTCATCTGCTGGCTTTTAGGAGAGAGCGCTCCAGACACCATCTTCACACTGGGACACGCGTTCTGTGCAGAGATGGCCGCGATGAATGATGCCGACTCCATCTCCATCAGTATGAAATTCCCCAGCGGCACCATGGCCTCCCTCGACGTCAGCCAGCACTGCAACAAGAGCTGCGACCAAAGACTGGAGGTCCACGGCTCAGAGGGCTCTCTGCAGATGGAGAACCGCAATCCTCTGGGAATCTCGGACCACAGCACCTTGGCCGGCCTGTGCCTGCAGGCCACGTCTGACCGCTACAGAGACGCCTACAGGGAGATCCTGCGCCACTTCCTCAGGACACTCAAAGGAAGGGAATCGCCTTTCTTCACCAAAGAGCAGTATTTGTGGACGATCCAGGTGGCGGCGGCGGCCGAGCAGTCGTGGAGGAATGGCTCCGCTGTGGACCTGCGCAACGAGGCCATGGAGAACACGGTCATCAAGACCGAGGTGCCGTGAACGGGCCTGGACTGAGACGAGTGAGCCCAGGGGCGTCTCCCAAACCCCACGGAATTAAGCTGCGGACACGGCCCATATCCATAACTATCGTTTTAAGACGTTAACCATTGATTTTGTTCATGTTTGCAAGATGGTGGGGCATTTGTAATACTACCCTCCGTGTCGCAAATAACCCCCGAAAAGTACTGTTGTGGACCTTGACTTTGGCATTGTGACCATTTCCAGTGGGTTCACGGAATTCATACAGGAGTTTCAAAGTCATGGAAGGTCAATACTTTAACCTACACCATAAATTTCACTCACAGTTTATTTGATATGCTCCCAACATTAGGGATCTGCAATCATTCTTGGCCAAACATGtttctcttgtatttatttgaatttatttattgtgcttaAGGTATTTCACCCCTTGTAGGATTTTTCAAATTagctcaattatttttttaaagaagtatATGGGTCAGTTATGTATTGGCTTAAAATCGATACCTTAAGCATTACACTGCACTGATAAATGTATATAGGACAAAAAGAGCTCAATTTACTGTTAAGACGGATGTTCTAATCTTGAGAACTTAACTTTGAATACTCAGATgccatgtacagtatatataactCCCAACATCCATCAAAAATGTGATATTACCTTCAAAAATATAGCTGTGGACTTGAATAGAAATGAATATTCACAAATGCAATAACTGTGCCTTAAATGCTGGCCCAGATACAATTAAAACTGTCAAATTACAACCCCAGTACTTGACAACTTCTTCCCAGTGgaaggtttgttttaattttgtcagcTCTCGCAACCGATTGAAATCTCTGGTGCCAAAACAGTCCTGTTCTGTTAAGGAGACCgatccaaaatatatatatattatatatatatttcaaaggaCAGTGGACAATGGACAGAGGAAGCCATTAAATGGATGACAAAAGAAGACCATGTAAAAGATGGGAAGACGGactaataaactttgcaggcgtgacatggaaaagagaagctgtggggaggccttcatccagcagtgtatcaatataatatgatgcatatatacatacatgtacacacacacacactatatacatgGTTTTTATTCCTTATATTTCATTGCTtcggtttgtttttatgttctaaaaaataccaaacattttttttttggttttcgtattcttttaataaatttatattgtttacatttGGTGTAAAGACCTTATTTTGGGaagataaaacaacaaatactttTTAGCTTATCTGTTGATTTGTACCCACACTATAACCCCTGCTGATTTCAGACTGAGCTCGCTGGGGTGTCTCCATTACAAGTTACAAACAAGCGAGTTGGGTTACTGGACCTTACAGCTCACAACTGGAAAAATATCCATGGCTGTACCTCTCGGCGAGTGTTTGATCCCTTATCTCCAGTTGGCATTGAGTGTAGCTGTAATTCTGGGATCATATTGCACGTCCTGCAAGCTTCGTAATTACTCTGTTGGCTCAAGTAGCCAGTGTGACATTGCTGGGACCATTAGTGTCATCAGGAGATAGTGCTGAGGGCTGAAGTCTGATATCTGCAGCTGCGACTTATTACTTGGAGTGGCTCTGTTTTTCACATCCATGTGCAGTctgatatttattattcagCACCCAGTGTGGTATATTGTTGCTGTACTTTACTCCTATTTCGTAGAAAGCAGGAACACTCAGCTAGTGCTTCATGTCACCTTAGCGCTGAATTACCCCAAATTACAAACTGCAGCAGTGCACATGTGTGTTTTACATATAAACCCCCATTTCATTAGATATGAACATGAGTCTGAgcttaaaaagtatataaaatggTGAGAACGAGGAGTAAAGGTGACTTAAAATCCTTTTTAAagtcagcatttaaaatatgtttcttaaaCTGGACTGCACAACATACACTCGTGGCAGAGTCCTTATAATTTACTGGTACAATCGGACActttaatggtttgtttttctctctttgccACCTTAAACCCCCCATAtgctttaaaagctttttaattacattaggCAGTCTAGCCTGAGATAATCACTCAAGGATCAGATGCCACTTCTACAGAGATTTCAGGTTGTGGAGGATAATACTTGCCTGCTATTTCATTAAGGAGAATTTGGAGAGTggataggaaaaaaaatactacacaaTCAGTGTGTGTGATGGACCATAGCCACCCTTCCAGACtcagatgtatatattttttaaaattgctAATGGCATAAAATGTGAAGCTGAAATCAAATATCTGTGAATccctatatatatttgtcttttttattttgtattaatatatatgtagtcATAAAAGTGTTGTCtcctgtataaataaaatgttttttgtatttttgaa

Function

GO: NA

KEGG:

id description
K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152177 lncRNA upstream 386626 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 436207 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1143860 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1438184 5243709 ~ 5275923 (+) True G121198
TU151880 lncRNA upstream 1486008 5227674 ~ 5228099 (+) True G121187
TU152324 lncRNA downstream 67175 6792976 ~ 6798043 (+) True G121526
TU152516 lncRNA downstream 835265 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 920917 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 1104006 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 1184757 7910558 ~ 7917243 (+) True G121741
AMCG00002192 mRNA upstream 58220 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002190 mRNA upstream 125492 6586921 ~ 6588615 (+) False AMCG00002190
AMCG00002189 mRNA upstream 160633 6537081 ~ 6553474 (+) True AMCG00002189
AMCG00002188 mRNA upstream 191883 6520509 ~ 6522224 (+) True AMCG00002188
AMCG00002186 mRNA upstream 289844 6402910 ~ 6424263 (+) True AMCG00002186
AMCG00002195 mRNA downstream 48122 6773923 ~ 6785974 (+) True AMCG00002195
AMCG00002202 mRNA downstream 384976 7110777 ~ 7119186 (+) True AMCG00002202
AMCG00002203 mRNA downstream 394778 7120579 ~ 7128460 (+) True AMCG00002203
AMCG00002204 mRNA downstream 419924 7145725 ~ 7150413 (+) True AMCG00002204
AMCG00002207 mRNA downstream 426672 7152473 ~ 7153321 (+) True AMCG00002207
TU152254 other upstream 111499 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 111499 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 1490609 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3174553 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3177679 3533814 ~ 3536428 (+) False AMCG00002098
TU152502 other downstream 667999 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 2027925 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 3118479 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 3118479 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3842111 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile