RNA id: AMCG00002197


Basic Information

Item Value
RNA id AMCG00002197
length 1509
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00002197
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6729634 ~ 6735812 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTCCCCCTTGCTGAAGAAACTGTACTGTCAGATCGCAAAGACCTGCCCCATCCAGGTCAAGCTGTCCTCAGTCGCGCCCCCCGGCAGCGTCATACGGGCGATGCCAGTCTATAAGAAGGCAGAGCACGTGACTGAGGTGGTGAAGAGGTGCCCCAACCATGAGCTGGGAAGAGACTTCAACGACGGTCAAGCTGCTCCTGCCAGTCATCTGATTCGAGTGGAAGGAAACAACTTGTCCCAGTATGTAGACGACCCCGTCACTGGGAGGCAAAGTGTCATGGTGCCTTACGAACCTCCACAGGTTGGGACAGAGTTCACCACCATCCTGTACAACTTCATGTGCAACAGCAGCTGTGTGGGAGGCATGAACCGCAGACCCATCCTCATAATCATCACGCTGGAGACACGAGATGGTCAGGTTCTGGGTCGGAGGTCCTTCGAGGGGCGTATCTGCGCCTGCCCGGGCCGGGACAGAAAGGCAGACGAGGATCACTTCCGGGAGCAACAGGCCATGAACGAGAACGTGGCCAAAAACGGCAACGCCAACAAACGCACTTTCAAACAGACCCCCCCGAACATTCCAGGACCCGGAATTAATATCAAGAAGCGGCGgcaaggagaagaagaaattTATTATATTCCTTTATTTAATTCACAAAAGGCCATCGTTCTTCTAAATCCAATAAATAGTTTACAAATGTGCACTGGGCAGGTCCGCGGACGGGAGAACTTCGAGATCCTGATGAAGATCAAGGACAGTCTGGAGCTGGTGGAGCTGGAAACTCCGGGTCAACAACTGTTGAACCACGTCCCCTCGCCCTCCTCCTACGGCTCGGTGCTGCCCAACATGAACAAGATCCATGGGGGCATCAACAAGCTGCCCTCCGTCAACCAGCTGGTGGGCCAGCAGTCCCAGCACAGCCCCGGCACGGCGCCCAACATGGGACCCATGGGCTCCAGCATGATGAACAGTCACCACATGCAGACGAACGGTGATGTAAACGGCGGTCACTCCGGCCAGCCCATGGTGTCCGCGTCCCACtgcacccctccccctccataTAACCCTGACCCCAGCCTAGTCAGTTTTTTAACAAGTCTTGGATGCCAAAACTGCATTGACTACTTCACGTCCCAGGGCTTACAGAGTATGTACCACCTGCAGAGCCTGTCCATGGAGGACCTGAGCGCCCTGAAGGTCCCAGAGCAGTTCCGTATGGCCATCTGGAGGGGCCTGCAGGAGATGAAGCAGAGCCACGACTACGGCCAGCAGCTCATCCGCTCGGCCAGCAGCAACACGGCCACCATGGCCATCGGCCCGTCCGGGGAGCTGCAGCGGCAGCGCGTCATGGAGGCCGTGCACTTCCGCGTGCGCCACACCATCACCATCCCCAACCGCGCCGGGCCGGGCCCCGCGGAGGACTGGCCCGACTTCGGCTTCGACGTGCCCGACTGCAAGCGCAAGCACTCCATCAAGGAGGAGTTCACAGACGGAGACCTCAACTAG

Function

GO:

id name namespace
GO:0010332 response to gamma radiation biological_process
GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator biological_process
GO:0006978 DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator biological_process
GO:0031571 mitotic G1 DNA damage checkpoint biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0010165 response to X-ray biological_process
GO:0051262 protein tetramerization biological_process
GO:0034644 cellular response to UV biological_process
GO:0043508 negative regulation of JUN kinase activity biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0000785 chromatin cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0002039 p53 binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003684 damaged DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10148 TP73; tumor protein p73

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 305336 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 316360 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 321719 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 343715 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 825265 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 922020 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 927174 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1094381 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1280252 8016064 ~ 8017075 (-) True G121789
AMCG00002196 mRNA downstream 16437 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002198 mRNA downstream 23110 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002193 mRNA downstream 62183 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002191 mRNA downstream 229362 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002187 mRNA downstream 282015 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002199 mRNA upstream 50315 6786127 ~ 6792271 (-) True AMCG00002199
AMCG00002200 mRNA upstream 62075 6797887 ~ 6824699 (-) True AMCG00002200
AMCG00002201 mRNA upstream 188186 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002208 mRNA upstream 339937 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002209 mRNA upstream 355028 7090840 ~ 7109181 (-) True AMCG00002209
TU151612 other downstream 2509757 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2943090 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3013382 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3601690 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3724717 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1100683 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3096099 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3106283 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4789081 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4931943 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070509 False 2333 mRNA 0.50 13 NC_007119.7 48858132 ~ 48935474 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_05728696_05760342.mRNA True 2385 mRNA 0.49 11 CI01000050 5728465 ~ 5760804 (-)