RNA id: AMCG00002198


Basic Information

Item Value
RNA id AMCG00002198
length 6323
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00002198
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6683032 ~ 6706524 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTGTCCACAGAGACAGAATGTCAGAAGGAGACAGTACTGGAGAGTCTATCCATGGGAAACCATCAACAATCGGTAGCTTTTTCACACGGCTCGGGCAGaTTTATCAGTCCTGGTTAGACAAGTCGACACCGTTCTCAACAGTACGATGGGCTGTCACTCTACTTCTAACGCTCATCTACATGATTAGAGTATATATATTACAGGGATGGTACATTGTTACATATGCTCTGGgaatttaccatctcaacctgTTCATTGCTTTTCTGTCCCCAAAAGTGGATCCATCAATAATGGATGATGCAGATGATGGCCCTTCATTACCAACAAAGCAGAATGAAGAATTTCGGCCTTTCATTCGAAGGCTGCCAGAGTTTAAATTTTGGCATTCAGCTACTAAAGGAATCGTGATTGCAATGATTTGCACATTCTTCGAGGCTTTCAATGTGCCAGTGTTCTGGCCGATACTTGTGATGTACTTCATCATGCTTTTCTGTATTACCATGAAGCGACAGATAAAGCATATGATCAAGTACAGATATCTACCATTCACACATGGCAAGAGGACATACAAAGGCAAGGAAGACACAGGGAAAGCTTTtgctaATTATGTTTTGGGAGGGCTGTTCCGAATCCACATCGCAGATCAGTCGAATGTTTCATATCGAAAACCTGAGGTTCTGCAGTGCTCTACATGGCAGTTTTTACCAGAGTACTATCAGCAGCTGCAGGTGTTGAGGTTTGCTGTGGAGGAGATCAATAACTCCACCTCTCTCCTGCCCAACGTGTCCCTGGGCTACGACCTCTTCGACTACTGCTCTGATTCACTGAATCTCCAGGTGGCCTATGACTTCCTGTCCAGCAGCCTGGACAGATCCGTTCCGGTTCTAGACCGTTTCCTAGGGTATCGACCTAAAGTCATCTCTTTAATTGGCCCTTTTGGGAGCACTGAGAGCCTTATCATCGGACCGTTGTTCATGTTCTATGATATTCCAATGATAAGCCCCGGAGCGTCGAGTATTCGTTTGAGCCATGAACCCTTTTTTAACTCATTTCTGCGCACGATCCCCAGCGACCTCTACCAGGTACGCGCTATTGTCCAGCTTCTGCAGAGGTTTAAGTGGAACTGGGTGGCATTCATTGGCAGTGACAATGACTACAGCCAGGACGCTCTTCAGGTCTTCAACGAGGAGACGCAGCGTGCTGGCATCTGTGTGCCTTACCAAAACACTATCCCTCAAGACCCCACTGGAATGCTCAGTATATTTCGCAAGATCGAGGCTCTCAAAGTGAGTGTCGTGGTGGTGTTCGCCACCCAGGACCTGGCTGTCCCGTTCATCCAAGCTGCTGTAGCGAACGATATCCGTGACAAAGTGTGGATCGCCAGCGAGGCCTGGTCAACGAACCAGTTCCTGTTCAAATTGCCAGGGATTGAAGCGATCGGCACCGTCCTGGGGATAAGCATCAGTGGACTGGGGCCCTTGCCTGGGTTTAAGGAGTTTGTGTACAGAACCATAATGCAAAGCGATCACGAAGCCTGTGCACAGACACAGCGTCCAGTGACTGAGGAAATGTGCAATCAGGATTGCCCAGAGTGTTCTTCTCTCACGCCCGAAGCTCTCCTGGAAGCAGACCCGACTTACAGTTTTAATGTGTACTCGGCTGTGTATGCTGTTGCCCATTCTCTCCATCAGTTACTGGGGTGTGGGGCAAATACCTGCACAAGGTCTGGACCGGTCCTGCCCCATATGGTTCTTGAAGGACTGAAGAAAGTGGACTTCATGTTAAAGGATCGTGTGATCAATTTTGATCAAAATGGAGACCCAACTCCCTACTATGACATTGTGGTTTGGGACAGGACCTCACTCGAGTTCCCCAAGAGGGTTGGTTTATACACCTCCGATCCAGCCCCCCGATTCACGCTCAACGAGAGTCTGATTCCGTGGTACACAAATGGCAGGGTACCGATATTAATATGCACTGCAGAATGTGAGGAGGCTGATCCTTACAATTGTACAAAGTGCGAAGACGACGAGTGGTCCGGTCAAGGAAGCACGTCCTGTAAAAAGCGCACCCTACAGTACCTCCACTACACCGACCACTTCTCCATCGCGCTGGTGGTGTCGACGGTCATCGCGCTCGCCCTTTCCATCGCCATCACCATCCTCTTCGCCCGAAACCGCGACACCCCGGTGGTGAAGTCTGCGGGGGGGACGATGTGCTTCTTCATGCTGAGCTGCTTGAGCGTGGCGTGCATGGGCATCTTTTCTTATATCGGCGAGCCCGTGCTGGTGAAGTGTACCTTGAGGAACCCGGTGTTCGCCGTGTTCTACACCGCCTGCCTCTCCTGCCTCGCCGTCCGCTCCTTCCAGATCGTTTTCATCTTCAAAATGGCGGCCCAGCTACCCAAAGCTTATGACTTCTGGGTCAAGCACAATGGGCAGTGGCTCGTCATCGTGGCATCCGTGGTCATCCAGATCTTCTTGTGTGGCATCTGGATTGGCACTGAAGGACCTCAGCCCTTCAGCGATGCCGCAGTATACATCGACCAGATCATCGTGAGCTGCACCATGGGAGGTCTGCGGGCGTCCCTGCCGGTGACATTGTTCGTCAGCTGTCTCAGCGTTGCCTGCTTCATCTTCTCCTACATGGGCACCGACCTGCCTAAAAACTACAATGAGGCGAGGTCTGTCACTCTTAGTCTGCTCATCTTCTTCCTGTCATGGATTTCCTTTTTCACCGCTTATATTGTGTACAGTGGGAAATATATCCAGGCTTTCAATGCTGTCTCCGTGCTGGTCAGTTTGTATGGAATACTCGCAGGCTATTTTTTCCCCAAGTGTtacattattctttttaaacCTGAACAAAACACGACGGCACATTTCCAGACCTGCATTCAGAGTTACACCAAATCTATTAGGGCACCCGCCATGGCATCCTGCGCATCATCAGATTTCAGACTACAGGGGGATTATATATTGGGAGGACTTTTCGAAGTTCATAACTCTCTGAACTATCAGTCAGAGCACAACAGACCTGAAGCCTTACAATGCTATCCATTGGACTTTTTGACTTCAGGCTATCAGCAGCTCCAGGTGATGAGGTTTGCTGTGGAGGAGATCAATAACTCCAGCTCCCTCCTGCCCAACGTGTCCCTCGGCTACCAGATCTTCGACCACTGCTCCGATACGCTGAACTTTCCGTCTGTCTTTGACTTCCTCTCCGTGAATGGGTCCGTCCCCGTtaagaagaagaacagagaTTATCGACCGAAAGTCATATCTGTCACCGGCCCATTTGGCAGCACTCAAACCATTACCATTGCGCCGCTATTCATGGCAAACCTCATTCCAATGataaATCACGGATCGTCAAGCGCACGCTTAAGCGACAAAACTGTATTTCCTTCCTTCCTACGAACAGTTCCGAGCGACAGAAATCAAGTGCAGTTGATTATTCTCCTCCTGCAGAAGTTCGGCTGGAACTGGGTCGCCTTCATTGGTGGCAACAACGATTACAGCCGCGATGCGCTGCAGGTCTTCAGCGAGGAGATCAAGTCCGCCGACATCTGTCTGGCTTACCAGGGGACGGTGCTGCAGAAGTCCCCGAGCATCGGCGCCATGCTGGACCAGATCCTGCAGCTCAAGATCAATGTGATCGTGGTGTTCGCCCCGCAGGAGTACGCGGTGGCTCTGATCGAGACCGCCATCCAGAACAACGTGCGGGACAAGGTGTGGATCGCCAGCGACAGCTGGTCCTTGAACCCACACCTGCCCAGGAAGGAGGGCATTCGGGCCATCGGCACCGTCATAGGGATAACCAGCAAGTCGCTGTCTCTGCCAGGCTTGGAGGAGTTCATCTATAGGACAATGTCTCGCACTGACCAGGGCCCTTGCGCTAAGACACCATCCAACGCAAGTGCGCAGACCTGTAACCAAGATTGCCCGTCGTGCGCCGTCGTGAATCCTAAAGTCATCGTCGATGAAGACCCGACATATACGTTCAGCATCTATTCGGCTGTGTACGCTGTCGCCACTGCACTGCACCAGTCACTGGGCTGTGGCGAGAAAGGGTGCGCAGGTCCTGGCACAGTTCACCCGTACATGGTTTTcgaaaaactgaaaaaggtgAACTTCACATTGCACGGCCGCGTCGTAGAGTTTGATGGGAACGGAGACCCGCCGGCCCATTATGATGTTTTATTCTGGGACTGGACCTCGTCTCCTCTCTTCAAGAAGATCGGCTCATTTTCTAAACAGCCTCGAACCAGTTTCTTTCTAAATGAGAGTCTAATTAGGTGGCACACAAATAGAAcgGTTCCTGTATCGGTGTGTTCAGAGGAGTGTAAAGTGGGTTATATAAGGAGAGTCACAGGATACCACAGTTGCTGTTTTCAATGTGAGGTCTGCTCGAACGGGACGTACGTCAATCACACAGCTGATCTCTACACCTGTAAGAAGTGTGAAGATGATGAGTGGTCGAATCACGGAAGCACTTCGTGCAAAAAGCGCTCTGTAGAGTATCTGCACTTCACGGAGTTCGTCTCCATTGGACTAATACTGTCTGCAGGTTTCCTGATCATTGTTTCAGTGGCTGTCAGCTGTGTATTTGCCTGTAACTATAACACTCCGGTTGTGAAGTCTGCGGGGGGAAAGATGTGCTTCTTCATGTTGAGCTGCTTGAGTGTGTCGTGCATTAGTGTCTTTGCCTACATCGGGGTCCCTGGGTGGGGGAGCTGCATCTTCAGAAACCCAGTGTTCGCCCTGTTCTACACGGCCTGCATCTCCTGCCTTGCCGTCCGCTCCTTCCAGATCGTGTTCATCTTTAAAATGGCGGCCAAATTGCAGTTTTTGCCTTCAGGCTATCAGAAGCTGCAGGTGATGAGGTTTGCTGTGGAGGAGATCAATAACAACCGTTCACTCCTACCCAACGTGACCCTCGGCTACGAGATCTTCGACTACTGCTCAGATATGCTGAACTTCCCGGCGGTCTTTGACTTCCTGGCCAACAACGGATCGGTTCTCGTTAAGACCGGTCTGAACAGTCAATACAAAGTGATTTCTGTGACCGGTCCGTTTGGGAGCACCCCCACCATTACCATCGCACCGCTTCTCATGTCTAAATTAATTCCCATgACATTTAAGTGGAACTGGGTGGCGTACATTGGTGGCGACAATGACTACAGCAACGATGCTTTTCAGTTCTTTGTGGATCGCATTGGACTGACCGACATCTGCTTGGCTTACCAAGCCATAGTTCCCAGACAGTCCTCCAACATTGGTGAGGTCCTCAACAAAATAGCAACCCTTAATGTCAGTGTGGTTGTGATATTTGCATTGCCAGAAGTTGCAGTACCAGTCATCCAAATGGCTATTAATACAAAAGTACGCAACAAAGTGTGGATTGCCAGTGAAGCCTGGTCCTTGAACCAGCAGCTGCTGGGGATTACAGGAATTGAAACCATTGGAACTATCATTGGGGTAACCCTGAATGGACTCTGGACACTACCTGGTTTTGATGCGTTTGTCCAGAAAACTATGGCTCGTGGAGAAACCTGGAGCTGCTCAAATGGACAACAGATGTCCGCAGTGGAGACGTGTAACCAGTTTTGCCTACAGTGTTCCAATGAATCCTCTAAGGATATCACCAGTGAAGACCCAACCTTCAGCTTTCCCATTTACTCGTCTGTTTACGCTGTTGCCCACGCGTTACATCAGGCACTGGAGTGCAACACGACAAGCTGTCAAAGAGCAGGAACAGTCTATCCCTATATGGCCCCCGTCCTGGTGTGTTCCTCCGAATGTAAGGACGGTTTCAGGAAGAAACAGAGAGGCATCCACAAATGCTGTTTTGATTGTGAGCTCTGCCCTAATGGGACGTTTGTCAATTACACAGCGGATCCCGAAACCTGTAAGGGATGTGGAAAGGACGAATGGGCAGACGAAGGAAGTACTTCATGTACCATGCGCTCTATCGAGTACCTCCACTACAGAGAGCAAATCTCCGTTGGAATAATGCTCTGCTCAAGCTTGGTGTTTTTCCTGTCGGTGGCCATCACCATTCTCTTCGCTCGTAACTGCAACACCCCTGTTGTGAAGTCTGCGGGGGGGAAGATGTGCTTCTTCATGCTGAGCTGCCTGACCGTGGCGTGcatcagtgtgtttttttatgtgggCGAACCTCTGATGCCCAACTGTATGTTGAGCAACCCGGTGTTTGCTGTGTTCTACACGGCCTGCCTCGCCTGCCTCGCCGTCCGCTCCTTCCAGATCGTGTTCATCTTTAAAATGGCGGCCAATCGTGTATCTGGACAGAAAAAC

Function

GO: NA

KEGG:

id description
K04624 TAS1R1; taste receptor type 1 member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 258734 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 269758 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 275117 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 297113 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 854553 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 951308 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 956462 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1123669 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1309540 8016064 ~ 8017075 (-) True G121789
AMCG00002193 mRNA downstream 15581 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002191 mRNA downstream 182760 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002187 mRNA downstream 235413 6428365 ~ 6447619 (-) True AMCG00002187
AMCG00002185 mRNA downstream 301601 6357657 ~ 6381431 (-) True AMCG00002185
AMCG00002178 mRNA downstream 420727 6258047 ~ 6262305 (-) True AMCG00002178
AMCG00002196 mRNA upstream 6473 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002197 mRNA upstream 23110 6729634 ~ 6735812 (-) True AMCG00002197
AMCG00002199 mRNA upstream 79603 6786127 ~ 6792271 (-) True AMCG00002199
AMCG00002200 mRNA upstream 91363 6797887 ~ 6824699 (-) True AMCG00002200
AMCG00002201 mRNA upstream 217474 6923998 ~ 6939545 (-) True AMCG00002201
TU151612 other downstream 2463155 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2896488 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 2966780 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3555088 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3678115 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1129971 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3125387 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3135571 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4818369 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4961231 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile