RNA id: AMCG00002199


Basic Information

Item Value
RNA id AMCG00002199
length 3676
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00002199
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6786127 ~ 6792271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTCTGCTCCCACATGCACAGCTGCAGGTTCAGTGCGCAGAATGCGGAAGCACGGCGGAAGTGGAGCCGCAGTGACGTGTGCGGACTTCCTGTGGCTGCGGGCGGAGGGCAGCTCTGTTAGTAAACACGCCGAGGAGCAGCGCTCGCTGTCGGACTGGGCCTGTCATTTCTCCGGCTCTGAGCTCCGCCCCAGGAACCCCGCAGATAAACCCCCATCGGCGCCATGCTGCAGCTCAACGACTCGGTGGAGCCGGAGAGCCCCGGCGCGGCGGTGCTGCACACCGGGGAGAGTGAGGACGGCGTGGAGGTGGCGTTCACCCCGCCGGGGCCCGGGGGACGCCAGCCGCCGCACGGCTCTGTCGGCCTGAGCCGGGGCGGCGCGTCCGTGGCCTGCTGCTCGCCCCTGCAGACGCTGACGCCCTTCCAGGTGCACAACCCCACCATGCAGGCCAAAGTGAAGGACTACTTTGTGTTCaggCCAGGGACCATTGAGCAAGCTGTGAACGATATCAGGACGGTGGCCATGCCTACAGAGGACGGCGAGGTGCAGAGCGTCTGGCTCCTGGCGGAGATCGATCACTGGaacaacgagagagagaggctggtgCTCATCACCGACCGGTCACTCCTGGTGTGTAAATACGACTTCATCAATCTGCTGTGCCAGCAGGTGATCCGAGTGTCTCTGAATGCGGTGGACACCATCTCCATTGGCGAGTTTGAGTTCCCGCCCAAATCCCTCAACAAGAGGGAGGGCTACGGCATCCGGGTTCAGTGGGACAAACGCCCCCGGCCGTCCTTCGTGAACCGCTGGAACCCCTGGTCCACTGACATGCCTTACGCCACCTTCACGGAGCACCCCATGGCCAACGCGGACGAGAAGATCGCCTCCCTCTGTCAGATGGAGAACTTCAAGACCCAGCTCGTCCAGGCGGTGAAGAAGGCCCACAAGGAGAACCCGCTGCCGGGCAGAGCCAACGGCGTGCTGATCCTGGAGCGGCCCCTGCTCATCGAGACCTACCTGGGCCTGATGTCCTTCATCAACAACGAGGCCAAGCTGGGATATTCCATGACCAGAGGCAAAATAGGCTTTTAACTCCCCTCTTTCCCCTCCTGGTCTTTTTATTTCACCGATTGACTCATTCTTCTATGGTGTGAGctaaaaatacatctgtgtaCGATAACTGTGACCAGGTCTCCACCCCTCTTACCTCCAGTCAACACAACTTGTGGGAAAAGAGCACATTTTAGGGTTTAAGTGCATGAGCCAACCACCCGTGGCCAGTGATTTAACCGCCGTTTGCTGTAAATTGTCATGCAGTTTCTCCGTTCTGTTGCGTCTCACTCAGCAAAGAGCTTTTATcaagaaagttatttttctagTATGTTTTCTGTACTTTGGGAACGGTACGAATAGGGCGACATGAAGGTTGGATACGTTTCTTGTGGGATACAGGCATTGAGTCGGCTATAATGAATATTCTGAATATTGTCCTTTTGTGGTTTGCAGCTGTTTAAACGCTAACAGCGCCGTACAGTGTTGCTTCATCACCTGTAGCCGCTGCCCTCGTCACAGTGAAGGGATTATTGTTCTTGTCCGAATCTGAAAGAGGCTCGCTGTTCTTTTCGTGGTAAAGGGACATTAACTGTGGCTTTAACATtatcgcattaaaaaaaacctcaTTAGAGAACGCCTCAGCATTAAAAGAGTAATTTATTGTTGTCATCGGTGGGTGCTGAGAGAAGTTGAAGTCCGTCTTGAACCAGGGAACATAAAGACCACCTGACCGTTGGGAAGGCTAGTGTGCTGTTAATTTCCACTAATGACTGGCTGGTAGAGGGCGATGAagttgccttttttgttttcttttcaatcaaACTAGGAGTTGATGTTTGCAGTTCTCAAATTGCTAAAAAatttctgattttgtacgtGTGACCTTGCACTAAACCACGTAGGTTCATATGAGAATAGGGCCAAATACGAATGGGTTTCATCCACAATATTTCAAtggttttgttaaaataatcatATCTGTTGTCTTGGGACTGCTGTAGTGACAGTAATGTGCAATGCTTCTCCATAATGTCATTTTATGGTTCCGATTCCCCACTGCAGATCCCAGAGTGGGCACATTGGTGTTTTTAGTGggatcagatttgttttcaaagcGTTTATCAATTCAAGCCATTGTTCATGAAAAcacttatataaaataaaaatataacgtATGACTGTTGGCCAGAGTAAAGAGATTTAATTCCAGTAACATTTCATATGCACCTTAGATTAATTTAGGGTGATGCCATCAGTGCTGGTTTAAACCTTTTCAGAGAAGCTGTGTTGAACCGGCGATCGGCCTTTGGTACAACTTGAGATTTCAAGAGGCAACTAACTACGTTATTGTTTGTCCACCCTTTGTTATGAAACTATGCACTGTGGTTTTGTGGTACCAAAGAAGAGAGTGATGTCAGGGTTTATTTCCCCTTTTAAGTCCTTCGGGGGATATCTGCAGCTCAGTCGGGAGAGGCTTCTTGTGTCTGTAGCTGTTTACTACCTGCATGTGCATGGCTGTTGCACGTCTTGCTGCATGCACGTCTGCTACGTTCGATTTGTTCAGTGTAATCTGGGCGAAATATACCGTTCCCGAGAAATGTAACCACGAGAGAgagatttgaaatgttaattagcACATTATAAATCACTTGTTTAgtttgggggggtgggattTGTTTCATATCTTTCAATATGTGAAAATTGATGACTGACTGCTGTACAAACATGCATCCAAATCCAGTTCAATATATTTCTGGAAACAGTACGAgtctttttgttcttgttttatttgtatttttgaagcttttgattattttttttaagatgtaacTTGTATTCTAGATTAAGAAATGAGGATAATGCAACAAGTTATATATAGgcagcaaaatatatatatctactcTGACATTAGGAGTAGTTGTGACCTGACCCAGTTGTTTTATATGCATTGTTCATTTGATGGTAGCCTGTATGTTGATGAATATGTGACGGTATTACTGGGTTCAGGGATGATAAACGGGGTCTATGGTTGATGTGTAAACTGCAGGACTGTCAGTTCAGTGTGACTCAGGCTGAACATTGAATTACTGGTAGTGTATGGTTTAATAACCATAGAAGTGGGAATTGCCTGCATTAATGctgttctgtactgtattttaggAGAGCTTGACAAAGAAATCTATACCTATAGGAATATAAACTTGGCATCTCTTCCATGCATGGGGTGGGAGTGAGAAATGAAGTCCCTTTTTTCTCCAGCAGAAGTTGCCAGAGTCATTGTCACTGTTTTTGGTACTTCTGGTCGCATCATGAACAGGGGTTTGAAATGTACAGCAGGAATCCGCTACTAAAGGGTAACTGCACCTGTTAAGCTATTTACACATATTGCAAATTTCTGCAAAAGGACTGATTTTCAGATCAATGAAGGAAAAGAAGTAGGCATTCAATATAAGGGCgttctttccatttcttttttaagcTATTTGcacttcatattttaataactgtatTTGCCAGTTAACTATtgcattaataatttattgcCAAGCAGCAGAGACCATGtttgtacatttctttcaaGATGGCTAGCTAAATATGTGAGACGGTGAGAGGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 361829 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 372853 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 378212 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 400208 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 768806 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 865561 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 870715 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1037922 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1223793 8016064 ~ 8017075 (-) True G121789
AMCG00002197 mRNA downstream 50315 6729634 ~ 6735812 (-) True AMCG00002197
AMCG00002196 mRNA downstream 72930 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002198 mRNA downstream 79603 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002193 mRNA downstream 118676 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002191 mRNA downstream 285855 6451274 ~ 6500272 (-) True AMCG00002191
AMCG00002200 mRNA upstream 5616 6797887 ~ 6824699 (-) True AMCG00002200
AMCG00002201 mRNA upstream 131727 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002208 mRNA upstream 283478 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002209 mRNA upstream 298569 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002210 mRNA upstream 372826 7165097 ~ 7177984 (-) True AMCG00002210
TU151612 other downstream 2566250 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 2999583 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3069875 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3658183 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3781210 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1044224 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3039640 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3049824 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4732622 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4875484 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile