RNA id: AMCG00002200


Basic Information

Item Value
RNA id AMCG00002200
length 3332
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00002200
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 6797887 ~ 6824699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGTGGACGATCTGGGCAATGTGAAGTTCTGCGTGGATGCCACCTTGGGCGGCAGCGGGAGTTGGCTCAAATATGTCCGGGTCGCGCCTTCCTACGAGGAACAGAACCTGACAGTTTGCCACCTCAGCGAGGACCAGatttattaTAAAGCTATTAAGGATATTGAAGTGGGGGAGGAGCTCCTGGTTTATATGAAGGACGGCGCTTTTCCCGAGGGATCCATGGCACCAAACCTGGAAGATGAACAGATGTACCGCTGCGAAGACTGCGAGGAGCTCTTCCCGTCCAAGCTGGATCTCCGAAGGCACCAGAAATACTCCTGCAGCAACGCCAACTCCATCTTCGACACCCTGAACGATGATTTCAAGCAGGAGGGCGAGGACGGCGAGGAGCCCCTTCACGAATGCAAGGACTGTGAGAAGATATTCCCCTCCGAATACAGCCTGGAGCAGCACATGATCGTGCACACGGAGGAGCGCGAGTACAAGTGCGACCAGTGCCCCAAAGCCTTCAACTGGAAATCCAACCTCATTCGCCACCAGATGTCACATGACAGCGGCAAGCGGTTTGAGTGTGAAAACTGTGATAAGGTCTTCACAGACCCCAGTAACCTCCAGCGTCACATCCGCTCGCAGCACGTCGGGGCACGCGCCCACACCTGCCCAGAATGTGGCAAGACCTTCGCCACCTCCTCTGGGCTCAAGCAGCACAAGCACATTCACAGCAGTGAAGTGTGTCACAAGTCCTACACCCAGTTCTCCAACCTCTGCCGCCATAAGCGGATGCACGCGGACTGCCGCACCCAGATCAAGTGCAAGGACTGTGGACAAATGTTCAGCACTACCTCTTCCCTCAACAAGCACCGGCGCTTCTGTGAGGGCAAAAACCATTACACCCCGGGCGGCATGTTCACCCCGGGCATGCCCATGACCTCCAGCCCCATCATGGGCAAATCGAAACCCCACCACGGCCTCAACCACGCTGGCCTGGGTTTCAATGATTACTTCCCCTCTCGGCCCCATCACGCCGGGCTTCCCTTCTCCACCGCTCCGCCTGCCTTCCCCACTCTCCCCCCAGGCTTCCATGGAATCTTCCCCCCCTCACTCTACCCAAGACCCCCTTTGTTGCCCCCTAGCCCCTTGCTAAAGAGTCCCCTCAACAACAGCCAGGATGGCAAGCTTCCCAGGAGCCCCCTGGACACCCCGGCTCTGTCTATGGTCTCTGCTATGACTAATAGTGGCAGTGGCCACCACAACCGATTAGAGGACAAATCAGAGATCAAACTAGAGGGGTCCTACTCAGAGAAGTCTAAGGTCAAGGTGAGCGACATGTCAGATGGAAGCGATCTGGAGGATGTCAACACCACCAGCGGTACCGACATGGACACGACCACGGGGACGGTCTCGGGCTCCGATCTGGACAGCGACGCAGACAGCGACCGAGACAAGAGCAGGGGGAAGATGGCCCAAGAGACCAAGCAGGACGACGTCAGCAGCAGCTCTGTCTCCATATCCAGCTCGGGCAACCTCCCGTGCGACCGGCCCTTCCTTTCCCAGCACTCCTTCTTCCCGCCCCCTGACGAGCAGGCCCTCCCCGCCACGGGTGCGGCCACCGACTCCATCAAGGCCATCGCCTCCATCGCGGAGAAGTACTTCGGACCCGGTTTCATGGGCCTGCAGGAGAAGAAGATGGGCTCCCTTCCGTATCATTCCATGTTCCCCTTCCAGTTCCTGCCCAACTTCCCACATTCCTTGTACCCCTTTACGGACCGGGCCCTCAACCCCAGCATGTTCCTCAAGGCCGAGCCCAAATCGCCCAGGGAACACCTGCAGAAGATGGGCGTCCCGGGCTCCGAGTCGCCCTTCGACCTCACCACCAAGCCCAAGGAGACCAAGCAACCTCTGCCGCCCAGCAAGCCACCGCCCGCCCCCAGCGCCCCCCACCTGCCGGGAGAGGAGCAGCCTTTAGACCTGAGTATCGGCAGCCGCAGCCGCGCCAGTCATAACGGCAACACCGCGGAGTCCCGCAAGAACCACGTGTACGCGGCCGGCAAGGGCCTGTGTAAAGACGACCTGCCCGGCCTGCCCCCGCCTCAAACCCTCCACCAGCAGCAACAGTCGCAGCACCAGCCGCCCCAACACCAGCCACCCCAGCCCCCGCAGCCACCCTCCCTGCACTACGCCAAGCCCTCTCCCTTCTTCATGGACCCAATCTACAGGGTGGAGAAGAGGAAGCTGATGGATCCCGTAGGAGCTCTGAAAGAGAAGTACCTGAGGCCGTCGCCGCTGCTCTTCCACCCTCAGATGTCTGCCATCGAGAACATGACGGAGAAGCTGGAGAGTACTGTGGGAAAATCTTCCCCAGCTAATCTCACCCGGCACTTGAGGACACACACAGGAGAGCAGCCCTACAGATGTAAGTACTGTGACCGATCGTTCAGCATCTCCTCCAACCTCCAGAGACACGTGCGCAACATTCACAATAAGGAGAAGCCCTTCAAGTGCCACCTGTGTAACCGCTGCTTCGGCCAGCAGACCAACCTGGACCGCCACCTCAAGAAGCACGAGCATGAGAACATCCCAGTGAGTCAACATTCTGGCATCCTCTCCAACCTGGGGACGAACATCTCCTCGCCCACCTCAGAACCAGACAATCATGCACTTTTAGAAGAGAAAGAGGACTCCTACTTTTCCGAGATCCGGAATTTTATTTCCAACAGCGAACTGAACCAGGCGTCCAGCTCCACAGATAAGAGGCCAGAGACCCAGGACGAGGAGCGCCCTCAGATCCACGCGCTCGCCAACTCCAAGCTGAGTGGCAGAGgcgcagaggaggaggaggaggaagaggaggcagagggggacGACGAGGACGAGGACGGCAGCCTGACGGAGAAGTCTCAGGACGAGGGCATCTCCCCGGCCACCGTACCCCAGGGCAGCTacgaggacgaggaggagcCCGCCTCTCTCGCCATGAGCTACGAGCAAACCAGGAGGTGTATTGATGAGGAGGAAGCCGGCCTCTTAGAGCTGGAGCAGATTCCGAGCTTCAACAAGGGCCTGGATCTCCGCAAGGCCGCCGAGGAGCCGTTTGATGTTAAAGACATGTTTAACACCTCCTTAGAGTCCGAGGCTTTAAAAGAGACGCTGTACAGGCAAGCTAAAACCCAGGCTTATGCAATGATGCTGTCTCTGTCTGAAAACAATCCTTTGCACACATCCTCCCAGAACTCTCTGGATGCTTGGCTGAACATGGGAGGGGGCGCATCAGAGTCGAGCAGCTTTCACCCACTCAACCACATCTGAGAGCGCGAGAGAGGAGCggcggg

Function

GO:

id name namespace
GO:0061337 cardiac conduction biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22410 PRDM16; [histone H3]-lysine9 N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 373589 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 384613 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 389972 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 411968 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 736378 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 833133 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 838287 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 1005494 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 1191365 8016064 ~ 8017075 (-) True G121789
AMCG00002199 mRNA downstream 5616 6786127 ~ 6792271 (-) True AMCG00002199
AMCG00002197 mRNA downstream 62075 6729634 ~ 6735812 (-) True AMCG00002197
AMCG00002196 mRNA downstream 84690 6712997 ~ 6713197 (-) True AMCG00002196
AMCG00002198 mRNA downstream 91363 6683032 ~ 6706524 (-) True AMCG00002198
AMCG00002193 mRNA downstream 130436 6666114 ~ 6667451 (-) True AMCG00002193
AMCG00002201 mRNA upstream 99299 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002208 mRNA upstream 251050 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002209 mRNA upstream 266141 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002210 mRNA upstream 340398 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002212 mRNA upstream 385567 7210266 ~ 7212964 (-) True AMCG00002212
TU151612 other downstream 2578010 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3011343 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3081635 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 3669943 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 3792970 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 1011796 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 3007212 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 3017396 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4700194 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4843056 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070496 False 2783 mRNA 0.51 10 NC_007119.7 48484455 ~ 48513642 (+)
grasscarp (Ctenopharyngodon idella) CI01000050_06086847_06251892.mRNA False 3378 mRNA 0.52 13 CI01000050 6086847 ~ 6251892 (+)