RNA id: AMCG00002203


Basic Information

Item Value
RNA id AMCG00002203
length 2190
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00002203
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7120579 ~ 7128460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGAGTAGGGAGGTCTATGAAAAAGGACTGTTTTGCCTCAGGGACCCTGTCATCGTCTTCTCTGAAGGGGACATTTAGTAAAATCCAGCAAAGGAGACCCAAACCAGGAAAGAAACCTTTACCAAGAGAAGAGGCCGAGAGCGACTGTGAGCTTTGTAGGAACCGGACAGTTCGTCGGATTCTGACGGCGTGCGTGATCTCGCTGCTGGCTCTCCTGGGTTCAGTATCCGTGGACCTCAGCAACAGCCTGCAGGTGTGGCGGGACTCCGAGGCGGCTCTCTCTGAACTCAGCTCTTGCAGGACGGACCTCGTCCTCGGACTCACCAGGGTGCTGCAGGGCGAGCGAAACTCATGCTGGTCAAGTAACACAACACTGCCTGTGACGTGTCAGCTGCCCTCCAACTATATAATACAGTGGATTGACCAGGTCTGTAAAACCATGGAGCTGCAGGCCAGTGGTCCTGCGCAGCCATGTGCTGAAGAGCAGAATGAACTCTGTGAAAGGCTTGTGGGAGCTATCGCTGAAGCCCTCAATGCGTCCTGGGAAAAAAAGGACTTAGAAATTAATGACACAATGGCAACATTTTCCTTGGCCATTTTAAAGCTCCTGGAAGTGTGGGGGAACCCAGAGTTGGATCTGAGAAAGGCGAGGCTCCATTCTGATTGGGCAGATGTGCTGTCACTCAAGCTCCTTATGGGGTTCCAAGAGGTCACCCACTACTTACATGGTGCATTGTCCCCCCTGTCCACTCAGACCTGGCCCGAGGCCGTGCATGGGCTGAACTTGGCCATGCTGCTGTCTGAGAACCTGCAGAGTTGCTGGCTGGAGAATGGTAACCTTTCCCAGCACTTGACTGAACTTGGAAACACATCCCTTCACTACCTTTCATGGACCTTCCTGGATCTGAGTTCTGCCGAAACCACGGATGATGTCATTTCTGGGCTGAGTGAGGTGCAGGCCTGTCTGGTTGACAGGGCCCGGCAGAATCTGAAGAGGAAATCTCGAGACTTCCTCTCCACTGTGAGCCTCAAGATATGCCTGTTGACCATTGCCTGCCTTATCTATCCCATCGTGCTGCTGTCCTTCAAACAGATGACCGAATGGATACAGAACTACGCGAGGAGCCTAAAGGAGAGAACAGAAGACCTCAAGCGGGAGAGGCGCCTGGCAGAGGACCTCTTACACCAGATGTTACCCAAATTTGTGGCTAAGCAGCTGCGTCAGCAAAAGCACGTGGAAGCCGAGAGCTACGAGAATGTAACAATTTTCTTCTCGGATATCGTGGGTTTCACGGCTATCTCGGCCTCCTGCACCCCCTTGCAGGTTGTGGAGATGCTAAACCacctgtatgtgtgttttgacaCTCGCATTGACTCCTACGATGTCTATAAGGTGGAGACTATAGGAGACGCCTACATGGTCGTGAGCGGCCTGCCAGAGAGGAATGGGGACAAGCACGCCGATGAAATTGCCAAAATGTCCCTGGATCTGGTGGCTGCTGTGCGGCAGGTGCCCATTCCCCACATGCCCACCAAACGGCTGCAGCTCAGATCTGGCATCCACACCGGCCCCTGTGTTGCTGGGATTGTGGGTTACAAGATGCCGCGGTACTGCCTGTTCGGAGACACAGTCAACACAGCCTCTCGCATGGAATCCACCAGCCTGCCTCAGAAGGTGCATGTGAGCTCTGCCACCTACATCGCCCTGATGAAGGACGACGCTTATGAGCTGCAGCTCAGAGGGGAGATTGAAGTCAAGGGAAAAGGTAAAATGAACACCTACTGGCTGATTGGACACAAGAATTACAGCGTCCAGAACGACAGCCTGGTCTGCCACTGGAAACCCGGTCTGTCgaggaagaagaaaatgggAAATGGGAGCAACACTTCTGGCGAACAGTCCAATACCAGCACTGCGTTCCAGAGCACCAGTGAGAACAACACCCCCGTCTCCCTGCAGGAGCGCGGCAGCAGTGCCCAGCGTCCAGGGCCAGACAGCCCGCTGCGCGTGTCTGCACTGGTGGAGCAGCCCTCCGGTGCGATGGGCACACTGGGCTCAATGATCGGGGGGTTGCCGGGCTGCAGCAGCGAGGACAATCCCCAAGGGTGTACCCGAAATGGGATGGCCGTGCCCAGTCCTGGGGAGAAGAGCGACCTGCTGCCTGGATCCGTCCTCCAAGGATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152324 lncRNA upstream 322536 6792976 ~ 6798043 (+) True G121526
TU152177 lncRNA upstream 793098 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 842679 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1550332 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 1844656 5243709 ~ 5275923 (+) True G121198
TU152516 lncRNA downstream 432606 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 518258 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 701347 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 782098 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 816905 7945365 ~ 7953624 (+) True G121767
AMCG00002202 mRNA upstream 1393 7110777 ~ 7119186 (+) True AMCG00002202
AMCG00002195 mRNA upstream 334605 6773923 ~ 6785974 (+) True AMCG00002195
AMCG00002194 mRNA upstream 394778 6714107 ~ 6725801 (+) True AMCG00002194
AMCG00002192 mRNA upstream 464692 6635934 ~ 6655887 (+) True AMCG00002192
AMCG00002190 mRNA upstream 531964 6586921 ~ 6588615 (+) False AMCG00002190
AMCG00002204 mRNA downstream 17265 7145725 ~ 7150413 (+) True AMCG00002204
AMCG00002207 mRNA downstream 24013 7152473 ~ 7153321 (+) True AMCG00002207
AMCG00002205 mRNA downstream 28027 7156487 ~ 7157849 (+) True AMCG00002205
AMCG00002206 mRNA downstream 31172 7159632 ~ 7166827 (+) True AMCG00002206
AMCG00002211 mRNA downstream 49979 7178439 ~ 7191115 (+) True AMCG00002211
TU152254 other upstream 517971 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 517971 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 1897081 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3581025 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3584151 3533814 ~ 3536428 (+) False AMCG00002098
TU152502 other downstream 265340 7393800 ~ 7396561 (+) False AMCG00002215
TU152752 other downstream 1625266 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 2715820 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 2715820 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3439452 10567912 ~ 10594304 (+) False AMCG00002294

Expression Profile