RNA id: AMCG00002212


Basic Information

Item Value
RNA id AMCG00002212
length 1369
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00002212
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7210266 ~ 7212964 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGTCACACTTTTCACGGAAGCAGGAAGATGTGCCTAGAGCCGTTATATGCAGGGTTAACACGATGCCCTTGGTTCCTGCAAACCAACCCCACCTGATTCGGTCCAGTCAGAAAGATGAATATTACCAGACCTGCCTGCGAAACAATGCAAATGAGGCATTTCAGACATTTGCAGGATCTAAGAGGTGGTTGCAATGGAGAAAAGAGACCGAGCTGCTGTCTGATCTTGCCTACTACACCCTGACGACCTTTGCAGGGTACCAGACCCTTGGAGAAGAGTATGTCAATATCATCCAGGTGGACCCCACCAAGCGGAGGATTCCCTCGCGGACGCGCCGGGCTGCCCTCATCCTGTTCCAGGCCTTCCTCCCGTATATCCTGGACAAGGCCATGGTCTGCCTGGAGCACGAGCTGCAGATTGAGGAGACGGGCACTGAGACGGCCCATCCTGCGGCCTCCGGACACTGGAACCCTGCCTCCTCCTTCAGGGAGAGGGTCCGGTGGGCTGCCAGGTCACTGACGGAGGCCCAGAAGAAGACCCTCCTCCACGTCCTCTTTGCCCTCCAGCAGGGTGTGACACTACTGCACAGGCTGCACGTGGCTGTCTTCTACCTCACTGGGGCTTTTTATCACATCGGGAAGAGGGCGGCCGGCATCAGATATCTACACGTACGCAGTCTTCCAGGGGACGACCGTGCTGTCCGCACCAGCTACAAGCTGCTGGGTGCCGTGTCTCTGCTGCAGCTGGCTTTGACTCTGGCCCTGCAGTTTAACAACTTCCGACAGAGACGGAGAGCCAGGCAGGAGTGGAAACAGCACCGAAACCTGCCCTCCTCCAGCACTCAGCCCGTCGAGACCTCGTCTCCCCGTCCGTCCCGCTGCATCCTGTGTCTGGAGGTGCGACGGCATTCGACTGCCACGCCCTGCGGCCACCTGTTCTGCTGGGAGTGCATCACAGAGTGGTGCAACACTAAGGCGGAGTGTCCTTTGTGCCGAGAGAAGTTCCAGCCACACAGACTGGTCTATCTTCGCAACCACAAGTAGAAGAAGAGCAACGATCAATGAAGTTTGGCTTCATATGATTCTACGAGAAATAACTCTGGGAACTGTTATTATATGAGACCTCTGTTAATGAGGTAATCTGTAAAAGACTTTGGGTGCAGGGCATGTATGAGCTGAATCTGTTTGTTTACACTCCCTCTTAACTGCCTGGAGCTTAGCATTCACATCcagatttattataattgttatatattacaaacataGATCACGAATGCCTGTGTTGAGATGTAATACTTATAATGAAGTTAATTTGTGTAAcgtatttaattaataagtgACTTACATGTGGAATTATTAAAACTGG

Function

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13346 PEX10; peroxin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152218 lncRNA downstream 785968 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 796992 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 802351 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 824347 6382433 ~ 6385919 (-) False G121443
TU152525 lncRNA upstream 348113 7561077 ~ 7562747 (-) True G121689
TU152556 lncRNA upstream 444868 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 450022 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 617229 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 803100 8016064 ~ 8017075 (-) True G121789
AMCG00002210 mRNA downstream 32282 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 101085 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002208 mRNA downstream 123853 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002201 mRNA downstream 270721 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002200 mRNA downstream 385567 6797887 ~ 6824699 (-) True AMCG00002200
AMCG00002219 mRNA upstream 352435 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002218 mRNA upstream 433691 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002221 mRNA upstream 478996 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 583759 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 607548 7820512 ~ 7826557 (-) True AMCG00002222
TU151612 other downstream 2990389 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3423722 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3494014 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4082322 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4205349 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 623531 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2618947 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2629131 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 4311929 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4454791 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile