RNA id: AMCG00002215



Basic Information


Item Value
RNA id AMCG00002215
length 936
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00002215
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7393800 ~ 7411230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCGCCTCCCACAAACCGCAGAGAAACTCTCGCTACTACACTGGAGAAGTGAAAAACCTCCTGCGGGACGGATATGGTCTGTACGTGTATCCCAACAGCTTCTTTCGTTATGAAGGCCTATGGAAATCAGGGAAAAAGCAcgGTCATGGCAAGCTGGTGATGAAAGGTGGGAGTTTCTACGAAGGCGAGTTCGTTAATGGAGAGATCGAGGGGAATGGACTACGCTACTGGGCTCATTCAGGTAACACATATTCGGGGCAGTTCAGTTGTGGAGAACTCCACGGGTACGGAGTCATGCAGTATGGCAGCGGAGAGCGCTTTGAAGGAGAATTCTCTTATGGTTTACGAGAAGGGCATGGGTTCCTTGTAGACAAGGAAGGACAAACCTACGAAGGctcttttcataaaaataagaaacatggGGAAGGCCAAATGAAGTACAGAAATGGGGATCAATATGAAGGAGGCTGGATCCTGGATCAAAGACAAGGCCATGGTCTGATGCACTTTGAAGACGGGTCAATTTATGAGGGTCAATGGAGGAACAATCTTTTCAATGGCCAGGGGACAATGATTCACAGCTCTGGTGTCGTCTTTGAAGGCTTGTGGACAAATGGGCAGCCTGCTGGTGGTGCGTCTAAAATAGTGATCGAGGGAGGCGATGTGCTCGAGGTTTTCCAGGGATCACCTTTTACTCTTGAAGTTCAGCTTCAAAATGATGGGTTTGAGTGTATTAGCTACCCTTTGATGGAGAGAGCCTTTGAAAGCGATGACTCCAGAGGCTCAGCCCTCCTCGCTGTGGCTAAATCCGGATTTGTGCGGGCCGACTCGCCAATCCCTGAGGGGGAATCGGAGTCTGGAAGTGGATCAGACACCATGGGACTCGGAGGGGGTACCCCTAGCTACCTGGATGTTGACTTTTCAATGGCCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152324 lncRNA upstream 595773 6792976 ~ 6798043 (+) True G121526
TU152177 lncRNA upstream 1066335 6327197 ~ 6327481 (+) True G121417
TU152159 lncRNA upstream 1115916 6277518 ~ 6277900 (+) True G121402
TU151928 lncRNA upstream 1823569 5474136 ~ 5570247 (+) True G121228
TU151892 lncRNA upstream 2117893 5243709 ~ 5275923 (+) True G121198
TU152516 lncRNA downstream 149836 7561066 ~ 7562732 (+) True G121680
TU152524 lncRNA downstream 235488 7646718 ~ 7648316 (+) True G121688
TU152562 lncRNA downstream 418577 7829807 ~ 7834211 (+) True G121722
TU152587 lncRNA downstream 499328 7910558 ~ 7917243 (+) True G121741
TU152632 lncRNA downstream 534135 7945365 ~ 7953624 (+) True G121767
AMCG00002216 mRNA upstream 3165 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002213 mRNA upstream 15376 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002214 mRNA upstream 69915 7318975 ~ 7323901 (+) True AMCG00002214
AMCG00002211 mRNA upstream 202701 7178439 ~ 7191115 (+) True AMCG00002211
AMCG00002206 mRNA upstream 226989 7159632 ~ 7166827 (+) True AMCG00002206
AMCG00002217 mRNA downstream 247028 7658258 ~ 7663689 (+) True AMCG00002217
AMCG00002224 mRNA downstream 516360 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002232 mRNA downstream 569074 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002231 mRNA downstream 605663 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002236 mRNA downstream 716967 8128197 ~ 8151854 (+) True AMCG00002236
TU152254 other upstream 791208 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 791208 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 2170318 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 3854262 3537619 ~ 3539554 (+) False AMCG00002098
TU151426 other upstream 3857388 3533814 ~ 3536428 (+) False AMCG00002098
TU152752 other downstream 1342496 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 2433050 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 2433050 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 3156682 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 3965710 11376940 ~ 11377738 (+) False AMCG00002311

Expression Profile