RNA id: AMCG00002218


Basic Information

Item Value
RNA id AMCG00002218
length 975
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00002218
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7646655 ~ 7647629 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACTGTAGCTCGCCCCAGCTTCCAACCTCATCCAGGACTGCAACAAACTCTGAAGCAGTTTCACCTGAGCTCTATGAGCTCCCTCGGCGGCCCGGCAGCTTTCTCGGCCAGATGGCAACAGGACATGCTGTACAAGAAAGAGGGCAAAGACCCAGAACCGGTCCTTCACCTCCCCATCCAGCCGCCGCCGGTGATGCCCGGGCCGCTCTTCATCCCGTCTGACCGCTCCACCGAGAGGTGCGAGACGGTCCTGGAAAGCGAGACCATCTCCTGCTTTGTGGTCGGCGGGGAGAAGAGGCTCTGTCTGCCGCAGATCCTCAACACCGTCCTGCGAGATTTCTCCCTGCAGCAGATCAACTCCGTGTGCGACGAGCTCCACATCTACTGCTCCAGGTGCACCGCGGACCAGCTGGAGATCCTAAAAGTCATGGGGATTTTGCCCTTCTCGGCGCCTTCGTGCGGCCTCATCACCAAAACGGACGCGGAGCGCCTCTGCAATGCCCTGATCTACGGGGGCACCTACCCGCCGCACTGCAAGAAAGAGTTCTCGGGCtccctggagctggagctgacgGAGAAGAGCTTCAAGGTGTACCACGAGTGTTTCGGCAAGTGCAAGGGGCTGTTCGTGCCCGAGCTGTACACCAACCCAAACGCAGCCTGCATCCAGTGCATGGACTGTCGGCTCATGTACCCGACGCACAAGTTCGTGGTCCACAGTCACAAGTCTTTGGAGAACAGGACTTGCCACTGGGGCTTCGACTCCGCCAATTGGAGGGCATACGTGCTCCTCAGCCAGGATTACACGGGCAAAGAGGAGAAGGGGCGCCTGGAGCAGCTTTTGGACGAAATCAAAGAGAAATTTGACTTCGCGAACAAGTACAAGAGGAAAGCCTCCAGGGTGAGTTGGCATGCAGAAAACCCATTGCCATGTActctggtggtggtggtggtggggtatGGTTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152525 lncRNA downstream 83908 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1222357 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1233381 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 1238740 6407705 ~ 6407915 (-) True G121444
TU152214 lncRNA downstream 1260736 6382433 ~ 6385919 (-) False G121443
TU152556 lncRNA upstream 10203 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 15357 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 182564 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 368435 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1177802 8825431 ~ 8859003 (-) True G121875
AMCG00002219 mRNA downstream 64557 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002212 mRNA downstream 433691 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 468671 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 537474 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002208 mRNA downstream 560242 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002221 mRNA upstream 44331 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 149094 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 172883 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002223 mRNA upstream 179012 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002225 mRNA upstream 198709 7846338 ~ 7856519 (-) True AMCG00002225
TU151612 other downstream 3426778 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3860111 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3930403 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4518711 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4641738 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 188866 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2184282 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2194466 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3877264 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4020126 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile