RNA id: AMCG00002219


Basic Information

Item Value
RNA id AMCG00002219
length 1398
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00002219
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7565399 ~ 7582098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCGCACATGTGCACAGTGCCCTGCTGAGGCGCCCAATCCTGCCTGCTGGTGTTCCAGTGCCCCATCTGCTTCCATTACTTAACTTCTATCATGAAACGCTAATTCTTGCAGTTTGCGCCAGGCCCAGTGGCCCCGCAGAGTCTGCCTGGCCCTCTTCCAGGtcCTCAGATCCGATTCCAGCCAAGAAGTCCAAACATGAAGATTCTGTCCCTCAGTCACCAGCAGCTGACAAAGAGAAGCAACCTGATTGGCTACGATCCCTCTCCTCTTCTGCAAATAAGGGTCTAAACTGCATTCATCCCAGGCAGCGACCTTCAGCCTTCCGCCCCTGGTCCCCCACCATTTCATCCAGTGAGAAGGAGACCTCCACGCATCTGCCCGCTGTTCTCCGAGAAAGCTTTTACAACTGCAAAAGTATAGAAACCTCAGTGGCACCCAATGTGGCCCTGACGCCATTGCCTCATCAGAAAGTGGGGCAGCATTCCCCGTCCGTACCCAGTGCCTCCCATGCCAATGGCAGTGATGATAGTGGAAGCAGCAGGCCAAGGAAAAGAAGGCTGACAGGCGAGGCGCACCCAGCACCAGAAACTCTCTGTCCCCCCGTCCCGGCAAGCACAGCAACCCAGGAAGACAAGGACTCCGAGGGAGAGATCGAGGTGGAGAGTCGGGAGGAATTCACGTCCTCTCTGTCGTCCCTGTCGTCCCCTTCCTTCACCTCTTCGAGTTCGGCCAAGGACCTGAGTTCCCCGGGGACCCAGGTGACCGCCTCCACAGTGTCAGCGGCCTTCGAGGGCCCGGCCCCGCTCAGCGAGGCCCACTGCTCGGGGCTGGAATCAGAGCTGGAGTCTCTGAGGCAAGCCTTGGACAGTGGCCTGGATTCCAAGGAGGCCAAGGAGAAGTTCTTGCACGAGATCGTCAAGATGAGGGTGAAGCAAGAGGAAAAACTGGGCTCCGCGTTGCAGGCCAAGCGCAGCCTCCAGCAGgagCTAGAGTTTCTGCGGGTGGCCAAGAAGGAGAAGCTGAGAGAAGCGACCGAAGCCAAACGCAACCTGAGGAAAGAGATCGAGCGGCTGCGCGCGGAGAATGAGAAGAAAATGAAGGAGGCGAACGAGTCGAGGATACGGCTGAAGagagagctggagcaggccagGCAGCTGCGAGTGTGTGACAAGGGCTGCGAGGCCGGCAGACTGAGGGCCAAATACTCAGCACAGATTGAAGACCTGCAGCTGAAGTTGCAGCATGCAGAGGCTGACAGAGAGCAACTGCGCGCCGATTTACTTCATGAGCGAGAAGCCAGGGAGCATTTGGAGAAAGTGGTCAAGGAGCTGCAAGAACAACTGTGGCCCAAAGCCGGCAGCAACAACATGGCAACCAAGGACtctgaaaactaa

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046332 SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152525 lncRNA downstream 2652 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1141101 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1152125 6413013 ~ 6413274 (-) True G121445
TU152215 lncRNA downstream 1157484 6407705 ~ 6407915 (-) True G121444
TU152212 lncRNA downstream 1179480 6382433 ~ 6385919 (-) False G121443
TU152556 lncRNA upstream 75734 7657832 ~ 7658851 (-) True G121716
TU152558 lncRNA upstream 80888 7662986 ~ 7663677 (-) True G121718
TU152604 lncRNA upstream 248095 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 433966 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1243333 8825431 ~ 8859003 (-) True G121875
AMCG00002212 mRNA downstream 352435 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 387415 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 456218 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002208 mRNA downstream 478986 7075749 ~ 7086413 (-) True AMCG00002208
AMCG00002201 mRNA downstream 625854 6923998 ~ 6939545 (-) True AMCG00002201
AMCG00002218 mRNA upstream 64557 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002221 mRNA upstream 109862 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002220 mRNA upstream 214625 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 238414 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002223 mRNA upstream 244543 7826641 ~ 7837116 (-) False AMCG00002223
TU151612 other downstream 3345522 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3778855 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3849147 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4437455 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4560482 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 254397 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2249813 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2259997 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3942795 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 4085657 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_04165584_04232583.mRNA True 2181 mRNA 0.59 7 CI01000010 4165584 ~ 4232583 (+)