RNA id: AMCG00002221


Basic Information

Item Value
RNA id AMCG00002221
length 1302
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00002221
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7691960 ~ 7719401 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTCCTTTACACTTTTTTTATCTCTTTTATAGAATCAATCTACCGTCGCGGGGCCAGAAGATGGAGGAAACTCTACCGAGTGAATGGGCATCTCTTTCAGGCCAAGCGCTTTAACAGGAAAGCTTACTGTGGCCACTGCAGTGAAAGGATATGGGGGCTCGGAAGGCAGGGCTACAAGTGTATCAACTGCAAACTGCTGGTTCATAAGCGTTGTCACAAACTTGTTCCTCTGACCTGCCAAAGGCATATGGATCCTGTCATGCCATCCCAGGAGCCCCCAGTAGATGAAAAAAATGACGAAGTGGACCTCCCTAATGAAGAATCGGACGGAATTCCCTTCCTGCCACACAATCGCAAACTGGACAAAGCTGAGGATGATTCGCAGgATATCAAGACTGTGGTGGATGGAGTAGACGGCATTAAAATCTCGCAGGGGCTGGGACTGGTGGACTTCGACTTGATCCGGGTGATCGGGCGTGGCAGCTATGCCAAGGTGCTCCTGGTCCGGTTAAAAAAGAACGACCAGATCTATGCTATGAAGGTGGTCAAGAAGGAGTTGGTGCACGATGACGAGGACATCGACTGGGTCCAGACAGAAAAGCACGTGTTCGAACAGGCGTCCAACAACCCTTTCTTAGTCGGCCTACACTCTTGTTTCCAGACTGAGAGTCGATTGTTCCTCGTGATTGAGTATGTCAATGGCGGTGATCTAATGTTCCATATGCAAAGGCAACGGAAGCTTCCGGAAGAACATGCACGATTTTATGCAGCTGaaatttgtattgctcttaaCTTCCTCCATGAGAAAGGCATCATCTACAGAGATTTAAAACTGGACAATGTTCTCCTGGACCATGAGGGACATATCAAATTAACAGATTACGGGATGTGCAAGGAGGGCATAAGGCCTGGTGACACTACCAGTACATTTTGCGGCACGCCAAACTACATTGCACCTGAGATCCTTCGTGGTGAAGATTACGGTTTCAGCGTGGACTGGTGGGCCCTTGGGGTGCTGATGTTTGAGATGATGGCAGGAAGATCCCCTTTTGACATCATCACTGACAATCCAGACATGAATACGGAAGAGTACCTGTTCCAAGTTATTCTTGAAAAGCCCATTCGCATTCCCAGATCTCTGTCTGTCAAGGCCGCAAGTGTATTAAAGGGTTTCTTGAACAAGgaCCCCAAAGAAAGACTGGGTTGCCAAGTGCAGATGGGATTTTCAGATATCAAATCTCACACCTTCTTCCGCAGCATAGACTGGGACCAGGTAAGGCTGAGATTTATGGGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA downstream 28283 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 33109 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 129213 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1267662 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1278686 6413013 ~ 6413274 (-) True G121445
TU152604 lncRNA upstream 110792 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 296663 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 1106030 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1149244 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1212762 8932163 ~ 8933163 (-) True G121912
AMCG00002218 mRNA downstream 44331 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 109862 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002212 mRNA downstream 478996 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002210 mRNA downstream 513976 7165097 ~ 7177984 (-) True AMCG00002210
AMCG00002209 mRNA downstream 582779 7090840 ~ 7109181 (-) True AMCG00002209
AMCG00002220 mRNA upstream 77322 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002222 mRNA upstream 101111 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002223 mRNA upstream 107240 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002225 mRNA upstream 126937 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002230 mRNA upstream 151493 7870894 ~ 7871496 (-) True AMCG00002230
TU151612 other downstream 3472083 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 3905416 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 3975708 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4564016 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4687043 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 117094 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2112510 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2122694 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3805492 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3948354 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile