RNA id: AMCG00002222


Basic Information

Item Value
RNA id AMCG00002222
length 864
RNA type mRNA
GC content 0.55
exon number 7
gene id AMCG00002222
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7820512 ~ 7826557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTGTAGACCCACGAGGAAGAGGTGCGACAGAGAGCGCCCCGGAGCGACAGAACGAGGAGCTGCATACGGGGGAAGTGAGAGTGACGGCAGGGAGGAGCTGTGGGTGGCGATCAGGGCAGTGGAAGAGGAACTGGGAGACGTGCTGGGGGACGTGTTGGCATCCATAGCTGTTGTGTTTCTGGCCGCCTCTGCTGTGGAGGAGTGCGGCCCCAGCGCATACAGTGTCAATGGCCAGTGCTGTGGGACGTGTGGGGCAGGCAGCTATGTGTCCCAGCACTGCACCCCACAGAATCATACCCAGTGTACCAGCTGTGCCAACGGCAGTTATATAGACCGGCCTAATGGGTTGCCCCAGTGCATTGCCTGTACAGTCTGTGACACAGAGTTGGGACTTTTTGAGAAACAGTCATGCACCGCTGTGAGTAACACTGTCTGCCAGTGTGTGGAACAGTTCTACTGCATGGATGGAGACTGGGAAAACTGCCATCTGTGCCGGAAACGACACGTCTGTGCACCAGGACAGTGGGTCAAACACAACGGAACAAATATATCTGACACCATATGTGAAGACTGTCCTTCTGGCACCTTTTCAAAAGAGGAAATGTCACAATCTTGTGCACCTTGGACTGTGTGTACATCTGGCCACAAGGCTAATGGGAGTTCAGTCATGGATGTAGAATGTCATGCCATCTCAAGAACACATATAGTACTGTTTATAGTGTTCCTTGCTCTTCTGCGATTGGACGGCAGGTGTGCCTGCAGCGTACGGATTGGCTGTGGCGCTGGCATTCTCCGCCATGTTAGCCAAATCCTCCCGGGAGACGGCGACTCGGGCGGCGCGGAGAAACTTCTGGAGTGA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA downstream 156835 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 161661 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 257765 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1396214 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1407238 6413013 ~ 6413274 (-) True G121445
TU152604 lncRNA upstream 3636 7830193 ~ 7845316 (-) True G121754
TU152667 lncRNA upstream 189507 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 998874 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1042088 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1105606 8932163 ~ 8933163 (-) True G121912
AMCG00002220 mRNA downstream 20009 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002221 mRNA downstream 101111 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002218 mRNA downstream 172883 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 238414 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002212 mRNA downstream 607548 7210266 ~ 7212964 (-) True AMCG00002212
AMCG00002223 mRNA upstream 84 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002225 mRNA upstream 19781 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002230 mRNA upstream 44337 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002228 mRNA upstream 61755 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002229 mRNA upstream 80478 7907035 ~ 7907578 (-) True AMCG00002229
TU151612 other downstream 3600635 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4033968 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4104260 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4692568 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4815595 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 9938 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 2005354 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2015538 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3698336 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3841198 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile