RNA id: AMCG00002223


Basic Information

Item Value
RNA id AMCG00002223
length 501
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00002223
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7826641 ~ 7839411 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACTCCAGTACAACATGCATCCCGTGTTTAAAAGGCACATTTACAGACCAAGTCAATAAGCTCCCAAGTTGCTTTCAGTGTCAAACCTGTGATTCAGGGTTGGGACTAAGAATTCTTCATGAATGCACCACGACCAGCAACACGGTGTGCGGTGCTTCCAGTGGATATTACTGCACAGAGAGAGCACAAGATAGAGGGTGTGGCTCAGCTCAGAAACATACTAAGTGTCAACCAGGACAGAGAACTATAAATCAAGGATCTCCCAATCCATCAGGGTTCCTGTGCTTTGCTGAATCATCACTGGACAAGGCAGTGTCCCTGGGATCTTCTATAATCACCAGATCGCTGGAAGAGCTGGTGCCTTATGGATATATAGACAGTGCCTGGAAAAACGCTGAGGACGGGGTAGTGGGCTGGAGCCTCTGTTTCAACAGGGCCCCGACACACTACCCCGTGTTGAGATCAGTGTTCTACTACAATGAAGACGGGTTTATTGTGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA downstream 162964 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 167790 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 263894 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1402343 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1413367 6413013 ~ 6413274 (-) True G121445
TU152667 lncRNA upstream 178948 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 988315 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1031529 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1095047 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1181010 9018126 ~ 9018327 (-) True G121935
AMCG00002222 mRNA downstream 84 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002220 mRNA downstream 26138 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002221 mRNA downstream 107240 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002218 mRNA downstream 179012 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 244543 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002225 mRNA upstream 9222 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002230 mRNA upstream 33778 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002228 mRNA upstream 51196 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002229 mRNA upstream 69919 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002227 mRNA upstream 101344 7938460 ~ 7945017 (-) True AMCG00002227
TU151612 other downstream 3606764 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4040097 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4110389 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4698697 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4821724 2995508 ~ 3004917 (-) True G120748
TU153137 other upstream 1994795 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2004979 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3687777 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3830639 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3894501 11731617 ~ 11734324 (-) True G122597

Expression Profile