RNA id: TU152605


Basic Information

Item Value
RNA id TU152605
length 541
RNA type TUCP
GC content 0.43
exon number 4
gene id AMCG00002223
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7826641 ~ 7839411 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTACCCTTGATGACGCATTTGATTGCAGCTCTGTAGAAAATGGAAATATTCCTTTAGATGGGTTATGTAATTCACTTTTTATACatgtaacacatttcaaaatgctaTGGATTCCGAAACATTGGTGAATATTGTGCTGATTTTAATTTGCAACCCGTTTGCAATGTACCAGGCCTGTGGGCCCGCAGAATACACAGTAGGAGGAGAGTGCTGTCCCATGTGTGGAAAAGGTTTCAGTGTGCAGCTTCATTGTACAGCTGACTCCAGTACAACATGCATCCCGTGTTTAAAAGGCACATTTACAGACCAAGTCAATAAGCTCCCAAGTTGCTTTCAGTGTCAAACCTGTGATTCAGGGTTGGGACTAAGAATTCTTCATGAATGCACCACGACCAGCAACACGGTGTGCGGTGCTTCCAGTGGATATTACTGCACAGAGAGAGCACAAGATAGAGGGTGTGGCTCAGCTCAGAAACATACTAAGTGTCAACCAGGACAGAGAACTATAAATCAAGGTACAGTTAGAGTCCACAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152558 lncRNA downstream 172818 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 177644 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 273748 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1412197 6420041 ~ 6424298 (-) True G121447
TU152216 lncRNA downstream 1423221 6413013 ~ 6413274 (-) True G121445
TU152667 lncRNA upstream 176653 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 986020 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1029234 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1092752 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1178715 9018126 ~ 9018327 (-) True G121935
AMCG00002222 mRNA downstream 9938 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002220 mRNA downstream 35992 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002221 mRNA downstream 117094 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002218 mRNA downstream 188866 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002219 mRNA downstream 254397 7565399 ~ 7582098 (-) True AMCG00002219
AMCG00002225 mRNA upstream 6927 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002230 mRNA upstream 31483 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002228 mRNA upstream 48901 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002229 mRNA upstream 67624 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002227 mRNA upstream 99049 7938460 ~ 7945017 (-) True AMCG00002227
TU151612 other downstream 3616618 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4049951 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4120243 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4708551 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 4831578 2995508 ~ 3004917 (-) True G120748
TU153137 other upstream 1992500 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 2002684 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3685482 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3828344 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3892206 11731617 ~ 11734324 (-) True G122597

Expression Profile