RNA id: AMCG00002224


Basic Information

Item Value
RNA id AMCG00002224
length 1302
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00002224
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7927590 ~ 7937933 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGACCCCTCCAAGATCACAGGAAAACCAGCTGGGTTACCGACAAGCAAAGATCTGCATGAATGTGAGAGTGAGAAGGTTCATTTGCCTTCAATTGAAGACTTGCAGGAGCACTGCCTGCTAATGTTAGGCCATGAAATCTCCCGCCTCTCAGAGTTTGAGGCCGAAAGCTCTAAAAAGGACCACGTGATCACAGCTCTTCAAGAAAAAGTGACGGAACTGATGAATCAGCTGACCCTGGCCCGTAATGAAGACGTTGTTCAAGCGCAGGCAGAACTGATCCTGCGCTTGGGCAATGAAGTGAAACACCTCCGGACCTTTGAAGAAGAGGTATCAAGACAGAAGGAGTTAATTGCAGAACTGAGTGAGGAAATAGCAAGGCTTAATCTCCCAAGACTGCAATGGGAATGTGCAGCCCACACCTCGAAAGAGCTGGAGAATGAGGCAACACAATTTGAAACCCAGCTAGAGACATCTCCGGAAACATGTCCAGCAACATGGCAAGACAGCTCAACCCTGAGTGAGACAGAAACCAGTTCAGAGTTGGAGGGAGTTGGGCAACAGAAGAAAGAACTGGAACACTTTCACGAGAATCTAGTAAAGGAGTTAGAGGAAACCAAACGGAAGTACAAGATGTCTTCTGGCACAGTGTGCATCTTACGGAGATGTTTGTCTGTGAAAGAAGCTGAACTGGTCAAGGCTGGGAACAGGCAGGAAAGACTGAGGAAGGAGCTTACAGACAGGGCGTTACAGCTCCAAGCCATGTCTAAAAAGTTTTCATGTTTAcgagaagggaaaataaatgaagaactGATGGCAGATCTGGAGAATGAGAACTTTACACAGAGAAAGCTCACAGCACGACTGCAGCAGGAGAtagaactgaaaaacaaagcGGTTGCTGAGTTCAAGGCTGAAGTGCACGGGCTGAAGCAGGAGCTGGCTGCACAGAGGGCAGGCATGACTGAGCTGGAGACAGACTTCAGGGAGAATCAGGCCAAAATGGCCAGTCTGCAGAAAATACACAATCAGACCAAGGTGTATCTGGAGCAGCTGCAGGCTCGGTTTGAAAGATTCCGTGGAAAAATTATACAAGCTGCCTACTGTGCTCCCGGAGCCAAATTCCCACTAAATGAGATCAGTGATGTTGAGATTCTTCGTACCATGCAGaaaataattgatgATCGTTCTCAGTTCCACCAGCTGCTCACacaaaaaggagagagaatgCCGCCTCTGTTCATCATGGAGACACAGCTCCCGATGAAAAGCAAGCCAATCTCTCCTAAAAAGAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152587 lncRNA upstream 10347 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 93379 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 279274 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 364858 7561066 ~ 7562732 (+) True G121680
TU152324 lncRNA upstream 1129547 6792976 ~ 6798043 (+) True G121526
TU152632 lncRNA downstream 7432 7945365 ~ 7953624 (+) True G121767
TU152757 lncRNA downstream 852368 8790301 ~ 8792478 (+) False AMCG00002245
TU152769 lncRNA downstream 878397 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 1310384 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 1604682 9542615 ~ 9562591 (+) True G121999
AMCG00002217 mRNA upstream 263901 7658258 ~ 7663689 (+) True AMCG00002217
AMCG00002215 mRNA upstream 516360 7393816 ~ 7411230 (+) True AMCG00002215
AMCG00002216 mRNA upstream 536939 7382538 ~ 7390651 (+) True AMCG00002216
AMCG00002213 mRNA upstream 549150 7325990 ~ 7378440 (+) True AMCG00002213
AMCG00002214 mRNA upstream 603689 7318975 ~ 7323901 (+) True AMCG00002214
AMCG00002232 mRNA downstream 42371 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002231 mRNA downstream 78960 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002236 mRNA downstream 190264 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002235 mRNA downstream 223393 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002245 mRNA downstream 800838 8738771 ~ 8791343 (+) True AMCG00002245
TU152502 other upstream 531029 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 1324982 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 1324982 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 2704092 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 4388036 3537619 ~ 3539554 (+) False AMCG00002098
TU152752 other downstream 815793 8753726 ~ 8762079 (+) False AMCG00002245
TU153130 other downstream 1906347 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1906347 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 2629979 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 3439007 11376940 ~ 11377738 (+) False AMCG00002311

Expression Profile