RNA id: AMCG00002225


Basic Information

Item Value
RNA id AMCG00002225
length 3086
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00002225
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7846338 ~ 7856519 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGTTTTGTGATTTCCACCAGACCTCTACTGCCCCCTCTGTGTGCTATGAGTTCCTCAGATCATGAAGAGAAGACCCCTGTACAATGTCACTGGacattaaaaccacacattGGACTGTAAAGGCAATACTGTTCCTGCTCTTTCTATGTAGGCTGTGCAGTGGGTGTGGCCGTGCAGAATACAATATAAACGGAGAGTGCTGTCCTATGTGCTCCGCAGGAAATCGGGTTTATCGTCACTGTACAGACTACTCCAGCACCTCCTGTATACCGTGTGTTGATGAGACCTTCACAGACCAGCCTAATGGATTAGATAAATGCCGTCCATGCAGTATCTGTGATGCAGGACTGGGTGTAGAGACTCTGAGGCGCTGTACGTCCTCCTCAGACGCAGTGTGTACTTGTATGAAGGGACATTACTGTGAGGAGCCAAATAAAGACGGTTGTAAACTGTGTCAGAAACACAGNNNNNNNNNNCCTGGACAGTTTATCAAACAGAAGGGATCATATTGGACTGACACATTGTGTGAGGGCTGCCCCACCAACACATTTTCAGACGGCTTTTTTAATTCATGTCAACGCCACACAGACTGTGAATTACTTGGGCAAAAAACAAGGAGACGTGGAAGCCCTTCATCTGACGCTGAGTGTGAAGAGAAACCTGACCATACTGCTCTGATAACTGGCACCTCAGTGCCGCTAGTGGTTCTTCTAGTAATAGCAGGAATAGTGGCATTcctatacaaaaagaaaattctGCACTGTATGAAAAgtgaaatgaaaaatacccagGAAACACCGACATGTGTTGCCTTAATGTCCACAGAGAGTCATTCAGGAGATGGAACCTGCACCAGCCCGCCCCCCAACACAGCTCACCATCAAAGACGACATGAGGTCGTACATCCCCTGACAGCTACCTGAGGAGCTGCGAATCATCAGCCGATGTATCTATCCCAATGTGAGATCCACTAATGAGTAACATACCACAAGGGCCCAGACCATGTCCCACAGCTGGAAGTAAGACAATCAGTGGAATATCTAAGTGACTGAGCCTCCTTAACTGCACAATCATCTTTCGGATTGATATTTGAAAGGTCACAGGGACCTGGCATCACCAGACCATCATTCCTCTCTGTGCGAACACACTCCTTGAGTCCCTGCCTGCATCCTTAAACAAGCTCCTGACTAGGATGGCCAACCTATTAGGAAAACTGATGAGTATCtgaacattcaatatttgttattCTGAACTTGAGAAATGATAAATGAGTAAGTGTTGCTGATATTGGTGAGGGTGGATTTGGTTCCTATGAGTAGCAGTTCTGACCTCGACCCTCGGGCTGTGCCAAGATACAGAGCCATAGAGGGCCCAGGTGTTCCTGGCCCCAGAGCCCAGGAGTGAAGAACCTGAGTGTCCAGTGCCCAAGAGGGATGAGCCCCTGTCCAGAGCCCTGGAGAGCAGAGCCCAAGCTTCCTGAAGATGAGGGAGAGGTACTCCCTTCCTTGTCGCACTCCAAGGATGAGTGTCCACCACCATAAATGCAGAAGAGAGTCTGCCCCTGAGCTCTGAGGAGCTTCAAGACTTCAGGAGAGAGTCGCCACAAACTGACCTGCTGAGACAGATTTGGGAAGCTGCAGGGCTGTCTTTAGCAAGGATGCTGAGTGATACAGGACTGGACATGGCACCTCTCAGAGGAATAACTCTCCTGGATGACTGGATTGTacctaaaaatatgaattatgaacTAGGTTGAAAGTTCTGTCAAATTGGCCACTGCCTACTGGAACCAGTTGAAACCCATATTTTACTTCAGATTGTTTTTCTATATTCCAAAACTGATATGCAATTATGAATTTCagatatatagaatatatttcTGTACTTTAATGATTATCATTAACATGATTAACATATAAActatacataaaaaacagaataatgcttttaactgcagtttattgattttattgaatttaaaattcaaatacatttaatacatgaCATGTCAAGTGTAATTTTAATGATCTCCAAACTCTGATTAAGTAAATCTCTGTTCATCTTTAACTGTcagtgttatgtttttttctcaagCAGTGTGATTTTCTGAATCTGAAGAACTGCAATTTTTTAACTGTTCATAGTGATGTGGAAGGttcactgcactgtggtgcGGGAGACCAGGGTTTGAGAttcgctgtgtgtgtgttttatgttaatggaatgctttttttgttttgtttttaactatgAAGGATCATATTTGAGGTACACAGTGTGTGAACACTGCCCTgccaacacattttcagattggCACTGCCCTGCCAAATTATTTTATGGCAATGTCACACACAATAGGTTTCCTTTTACTCTTGCTTTTTTATTGAGGGCGAGAAGAATATTACTTGTAtgagttgtatgtgtgtgtgaaaagatTCATGTagtatatgatatgatattattattattattattattattattatatttttgtatgcagttttatgcattttctaTATCAGCctcttattttaaagttgtgAATTATTGGGGCAAATAACAAAGAAGAGTGGAACCGCTCCATCTGATGCCGAGTATGAAGAGAAACCTCCATCTATTGGTCTGATAGTTGGCATCACAGTGATTCTAGCAGGAGGAATAGCAGTATCTGTCctatacagattttaaaagctgCCCTGTATGAAAGGTATGATTTGATCagtgaatttgtatttgtactgtataCTATGTTATTAAAGTATTGATATTCTTAATTGCATATTACATATGGTAATTAATCAagcaatgtattaatgtaatgtgttttcgCATCTGTGGCttgaaagtatatttaataatgaagcacaatgttaaaataaatagctgTCCAACAATGACAATATCTGAAATGCATCAACGTTGAAGACTATGAAATGGGCTTGATTCTCAGAAGAGTGTAAAAATcaagtttatatattaaaacaatattatataaacaaaccCTTTATTAAAGCTGAATAAGCACggaaaaatattttagaagCATTAATTGCAAATATACCCCGTGTGCTTTGagtattttat

Function

GO: NA

KEGG:

id description
K05152 TNFRSF14, HVEM, CD270; tumor necrosis factor receptor superfamily member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152604 lncRNA downstream 1022 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 182661 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 187487 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 283591 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1422040 6420041 ~ 6424298 (-) True G121447
TU152667 lncRNA upstream 159545 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 968912 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 1012126 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1075644 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1161607 9018126 ~ 9018327 (-) True G121935
AMCG00002223 mRNA downstream 9222 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002222 mRNA downstream 19781 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002220 mRNA downstream 45835 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002221 mRNA downstream 126937 7691960 ~ 7719401 (-) True AMCG00002221
AMCG00002218 mRNA downstream 198709 7646655 ~ 7647629 (-) True AMCG00002218
AMCG00002230 mRNA upstream 14375 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002228 mRNA upstream 31793 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002229 mRNA upstream 50516 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002227 mRNA upstream 81941 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002226 mRNA upstream 113384 7969903 ~ 7979082 (-) True AMCG00002226
TU152605 other downstream 6927 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 3626461 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4059794 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4130086 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4718394 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1975392 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1985576 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3668374 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3811236 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3875098 11731617 ~ 11734324 (-) True G122597

Expression Profile