RNA id: AMCG00002226


Basic Information

Item Value
RNA id AMCG00002226
length 2811
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00002226
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7969903 ~ 7979082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGGAATAGCCGGGCGAACACtaatattgaaattgaaagcgataacttgtattattattgtggtccccatttgtatatacaaatacagatttataattcattttcagttgttttctggTATTGTGTTGGCAGCGGAAGTAGTTTCCATTCTACTTCCGGGTgaagtgtttttcttattctATACCCGGTCTGCACTGAGCTGAAAAGCATGGAGGTTTACTCGGAAAGTCAGTGGGAAGAGATTGAAAAAGCTGGCCGAGAGAAGAGGCGTGAGCTTGTGTTACAGGGAGTGAACATCGATCAGAAAATACAGGAAAGCGGGGGTCTGAATCCCAGAATATACAGCCTCACCCTGCTCAACTACCTGGAAATCAGCCAGTGTCCCAGCCTGCGGGAGATCCACCAGGGCATTGAGCGGCTCGTCCATCTCCAGAGCCTGATTCTCTGCAGGAATAAGCTCTCGCAGATCCCCAGAGCCGTGGGCCAGCTGAAGGCCCTCAAAGTCCTGGATGTCTCCGTGAACGAGTTGCAAGCGCTGCCCGACGAGGTGTCCCAGCTGTGCGAGCTCAACACCCTCAACGTCAGCTGCAACAAGATCTCCGCGCTGCCCGGCGGACTGAGCAAGTGCGTGAAGCTGTCCACTATCAATGTGTCCAAAAATGAGATCAGCAGGTTCCCCGATGACCTGTACTCCGAGGACCTGGACCTGCTCAGCACCATCGTGGCCTCGGAGAATTGCATCGAGGAGCTGAGCGGAGAGATCCATAACCTGGTCGCACTCAAGaaTTTGGACCTTTCCAATAACAAACTCACTGACATCCCCCCCGAGCTGGCTGAGTGCTCCAAGTTGAAAGAGATCAACTTTAAGGGGAACAAGCTGAAGGACAAGCGCCTGGAGAAGATGGTCAATGGCTGTCAGACCAAGTCCATCCTGGATTACCTGCGAGCCGGTGGCAGGGGCAAGGGGAAGGGGAAGAAGCAGGACAGCGGGGAAAAGGAAGAAGGCCGGGAGAAGGACCGAAAGAAGAAAAACGACAAGCGGCAGAAGAACAAAAAGGAGGACGAGGGGGTGGATGATTTGAACCGGATGGTGGTGAGGGTCCTGCACATCTCGGAGAGCCCCACCGCGGTGATGGTGAAGGTCACCGCAGCGGTCAAGGATGTGCGCCCATACATCGTCTGCTGCACTGTCAAGGGGATGAACTTAAAGGCAGGGAATTCGCTGAAAAGGTTTCTAACAGCACAGATCAAACTCCACGATGAAATCTGCGAGAAACGGACAGCTGCCACCATTGCCACCCACGATCTTAGTTTAATTAAGGGACCCCTGCTCTACGATGCCAGACCACCCAAAACGCTGCAGATCGTTCCACTGGGCCGTAAGGAGACGAAGGCATCGGATCTGGTGAGGCAGCTGCAGCTGGAGGCCGAGGAGCAGAGGAAACAGAAGAAACGCCAAAATGTGTCTGGGCTTCACAAGTACCTACATCTTCTTGATGGGAAGGAAAACTTCCCTTGTTTGGTCGATGCAGAGGATCACATCATCTCATTTCCACCGATAACAAACAGTGACAAAACAAAGATGAGAAAGTCCACCAGTGAGCTGTTTGTGGAGGTCACCAGCTCCACTAGTCTCCAGATATGCAAGGATGCCATGGATGCTTTGATTGTGAAAATGGCAGAGCTGAACAAATTCACCTTTGACCACAAGGAAGAAACCCTGTCAGATGGGGAGACGGAACCCACCAATTGCGAGCGAGCTTCAGAGCCCACAGCCAATGAAAACGCCTCTCCAGAGCTGATCGTGCAGCAGGTTCGAATTGAGGATGCAGATGGAAACTTAAAAGTAGTTTACCCGTCCAAAACTGACCTCGACGTAGACATGAGCAACTTGACTGTTGTGCGATAGCTCCAAATATAAACCATGTTCTTCCTTTGTGACGCACAGGTtgccatctgtttttttttttttttttcctaacttTTCcttttgtgcttctgtgctcTGTGGGATTCTCGGTTACTGTCTCTTtttttgatatataatatataaaatctcTATCCTGAAAGGACTTTACAAAGCTGAAAGAcagaaataatgacaataaatataGCCCTGCTGTGTCACAATACATAGTCATGGTATCAAGTCAACATGCTACCCTTGTTTACTATCTAGGCATAAGCGTTTACAAGTGTTTATGGAAAGTGTTTTGGAAAAGTTAAGTAACCCAGCAAATAACAACCTAGTCTGAAAACACAACCACAGAGATCCCAACCCAGCaattacattcttaaaaatcattaaaaactgaaatttaaagGATTAATCAGATTAactttaaacactttatttgtaatgtggctttttgcaattgttttttttttttaagcaatttgtctctctctttgagACTTGAAGTGAGACATACTGTAATTCCACTTATAGTTTAGCTTCGTTTGAACCTCAATGGACAGGCCCCAGGAATTAACTGGAGATTTGATGTGTGCTCTAATATGATTCATAATTATAACCATAGACATTAACACAGacattaatgtaaaatactcacaAACAGGCCATGGTATTATTACGGTTTTTTTACATGGTCTATATTGTATGCAGTACTGCACAATGTATTTTCAACCCCATCGATTAATGTCTCAATAAACAAGTTGTGTGGTTTTCTTACCAatatttattaagttaatttattcTGGAGCAtatgtcattatatatttttcagacaaTGGCTAATGAAGTCCATTTAAAGTACTCtaaacatttcaatttccaaattaaatgaaag

Function

GO:

id name namespace
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152604 lncRNA downstream 124587 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 306226 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 311052 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 407156 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1545605 6420041 ~ 6424298 (-) True G121447
TU152667 lncRNA upstream 36982 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 846349 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 889563 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 953081 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1039044 9018126 ~ 9018327 (-) True G121935
AMCG00002227 mRNA downstream 24886 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002229 mRNA downstream 62325 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002228 mRNA downstream 68237 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002230 mRNA downstream 98407 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002225 mRNA downstream 113384 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002233 mRNA upstream 33895 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002234 mRNA upstream 43595 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002237 mRNA upstream 517000 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002238 mRNA upstream 727447 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002239 mRNA upstream 733383 8712465 ~ 8720117 (-) True AMCG00002239
TU152605 other downstream 130492 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 3750026 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4183359 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4253651 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4841959 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1852829 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1863013 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3545811 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3688673 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3752535 11731617 ~ 11734324 (-) True G122597

Expression Profile