RNA id: AMCG00002227


Basic Information

Item Value
RNA id AMCG00002227
length 2323
RNA type mRNA
GC content 0.38
exon number 9
gene id AMCG00002227
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7938460 ~ 7945017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGCCCTCAGTGTCGCCAGCTGAGTGACGTAAAAACTGCGTCATCAGGGCGCGACAGACATTTAGTCAAGGTGGATTCTAAACATACCGATATAGTATTTCgttgaaaactgtaaaatgtaatgtaaaaaggGATCATATTTGTGCGATGGTTATGGCTGTCATCTCTGATGTATTAGTATGCTATCGTGGGCGCTGACTTCACGAGAAAACATGGGATTGTTTGTATGAATCTGAAAATTGCGCGGCATAGTTTTGATCATTCTTAGTGTGCGGTCAGCATGACTACCCTAACCAGACAGGACCTCAATTTCGGACAGgTGGTTGCTGATATCCTGTGTGAATTTTTGGAGGTGGCCATCCACTTAATCCTGTACGTCCGGGAGGTGTATCCTACTGGGATCttccagaaaaggaaaaaatacaatgtaccaGTACAGatgtcATGCCACCCTGaactaaatcaatacatacaggATACTCTACATTGTATAAAACCACTAATTGAGAAGAATGAAGCAGAGAAAGTAGTGGTCGTCATCATGGACAAAGAGCACCACCCAGTGGAgagatttgtatttgaaatttcACAGCCGCCTCTGCTTTCCATTAGCTCTGATACGTTGCTGTCTCATGTGGAGCAGTTGTTGAGAGCTGTCATCCTAAAAATTAGTGTTTGCGATGCAGTACTTGACAACAATCCACCAGGGTGTACATTTACAGTGCTGGTGCACACGAGAGAGGCTGCCACACGAAATATGGAAAAGATTCAGGTTATTAAGGATTTCCCATGGATAGTAGCCGATGAACAGGAAGTGCATATGCGGGAGCCCAGACTCATACCTTTAAAAACCATGACGTCAGATATTGTTAAAATGCAGCTGTATGTAGAGGAACGAGCACACAAGGCATCTTAAACCACATTGGAAATATACAACTTATCAGATGCCATCTAAAATGAAACTGCCTTCCATATGTAATCTACTCACACATGGAAGTACAACAGCGTctatttaacacatttcaacTAGAAGTGGCATCAATGCCTGCTGGTGCATCCTTCTTCAGAATCTGAACATTACTGACAGAACGCAAGCAAAAAGGTAGACGTGGAAAGAACTGATTAATTagttgaagaagaaaataacctTCATTTAGCCTTAATGTCCTTGGATATGTATTGAACGTCACTGCGCATCATACCTCTTCACCAGGAGTGCACCACACTCTCCATATGCAGAAATAAACTAAGCGAGCAATGTATTTGAAGCAGCACTTTGGTCAAAGCGAGCACAAGTGTGGAGATGTAGCCCACTTTAAGTGCCATTTAGTCGGAGTCACAGCAAATGTTGTGTTCTTACCGATCGCAGATCAGAACTGTAGATGATGTATAATGAAATCGCCACAACTAGTCCTTTGCATTTGATATTGTATGAAGTTGTTGGTGTTAATGAGAAGATTTATCTTGCTTTTATAACTTTATAAAGCATTGTCTTGTGTCAAAACATGTGTTTTGTCAAAAcagttacaattattatttttaaatctgccatgtttatttaaaagctatttcTTGGATTTGTAGTGTCTCTTGCaaccccaaaaaaagaaaaagctcttGCAGTGAGCTGCTGAACATTTATACACATTAATTCCtcataaattaactttttatgaaatatatgtaCTATATACTGAAGTCTGGAATGCAATGTCAATGCAAGTGTGTAAAAGTAttgaatgtttatatattttggtgttttttaGAATCTTTCATTATCTTCATATTGCCTTAAAGAGATTATTCATTCTGCTAGGATAACGTTATGGGATGTTTTACGGGCAGCAGACAATCTTATTTTGTCCTCTATAGTTTAGCATTATGTTCCTCCAAGTACCAACAATAATTGTCAGTAAGGTGTTTTGTACTGTTCAGCCATGCCCTGAAAGCACACAAAGCTGGCTTCAGGACAACAGTGACTTACTCTTTGGCCCTCATGCAattctttccctttttattcTTAACATTTTGGAAACTACCTAGATTAAATCAATGGTTACTTCATTGAAATGTCCAGAGTCTAtttgttatttcattatttgGTACCGTAAGAGTTCTATTGTCTATGAGTTGCTCAGTGCATTGAAAGCAGTGTGACCTTGTTTCCTTGTTGGattttgcagaagaaaaaaaaaacaggaaggttGCTAGTTTAATACCTTCCATTAAATTGTTCTGATTCACTGTGCAGACATCCTTCCTCGCTactgttatgttttaaatgttgaaaatacaaatgtaataaatacgcttttaaaataa

Function

GO: NA

KEGG:

id description
K13728 MAD2L2; mitotic spindle assembly checkpoint protein MAD2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152604 lncRNA downstream 93144 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 274783 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 279609 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 375713 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1514162 6420041 ~ 6424298 (-) True G121447
TU152667 lncRNA upstream 71047 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 880414 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 923628 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 987146 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1073109 9018126 ~ 9018327 (-) True G121935
AMCG00002229 mRNA downstream 30882 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002228 mRNA downstream 36794 7888312 ~ 7901666 (-) True AMCG00002228
AMCG00002230 mRNA downstream 66964 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002225 mRNA downstream 81941 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002223 mRNA downstream 101344 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002226 mRNA upstream 24886 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002233 mRNA upstream 67960 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002234 mRNA upstream 77660 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002237 mRNA upstream 551065 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002238 mRNA upstream 761512 8706529 ~ 8708937 (-) True AMCG00002238
TU152605 other downstream 99049 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 3718583 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4151916 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4222208 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4810516 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1886894 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1897078 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3579876 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3722738 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3786600 11731617 ~ 11734324 (-) True G122597

Expression Profile