RNA id: AMCG00002228


Basic Information

Item Value
RNA id AMCG00002228
length 3793
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00002228
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 7888312 ~ 7901666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGTTTTACGGAAGACAACACAGACCGGCATTTACTAACTAAAACTCCGTTGAGAGGTACcgagatgttttgtttgtttatcaggGCTACATCTGTTACCCCCACTGTGTGCTCTGAGTTCCTCAGATCATGAAGAGAAGACCCTGGACAATGTCACTCGACATTAAAACCACATATTGGAAagtaaAGTCAATCTTGGTGGCCTGTTCTTTCCATGTCAGTCGTGCTGTACAGTGTTTGTTGTcatgtcagtgcagtgtgttgttcTGACTGGACTGGTCATCTTAATCCTCATCACTAGGCAGTAGAGTTCACCGCCACTGTACAGACTTCTCCAGCACCTCCTGTGTACCTTGTGGTGATGAAACCTTCACTGACCAGCCTAATGGGTTAGATAAATGCCGGGTGTGTAGTGTCTGTGATGCAGgtgaaaaaaatatgtagagACCTTCTGGAACTTGTGGAGtCAGAATAAAATCCAGGTGTTTCATTGGACTGCAGGAGAGACATAACTCTTGCAATGAATACAAACTCTTCACCCAACAAACATCCTTTACCTGAAATGTGTGAGTCAGTGCAGCCCAGAAACCCCATATATGGATGGGCAAGGATATTCATATAATAGTATATTGAGTGTGGTGTTGAGTGTACAGAGAAGGGTGAAAACATGCACAAGTCACACTACAGcatgtttaaatttaatgtaCACAAGcctaaaaatgaaatagtttCCCTTGCTTAATGTCACATAAATAAAGGGTTTGTCTACTGTTAGACTTGActagtaatttaaaaatatggtatCCATAGAGTTAACACTGAATAACTTTGTCTATAAATAGACTGCAGCAGGTTTAGacctttaacattttcatatttttatgattgttgtttttaaaaatgtattttaaaatggggAACAGTTTTTGTAAATTGGATCTTTTGCAATTTAGATTTGATTGTTTCATGGTTTGGGTTAatgctgtctttttgttttcttttagaatGAAGTGTCACGGTTTTAATTTACTGGCTTGTGTTTTtggctgattttaattttatttcactctATATACaccttgtatttgttttatactttgTTTCACTTGAAAGtggctttttttattatgttttgggtAATGCTTTTGTAAATGGCAACAGATGCATCCAACAACTGTTAACACCTTGTTCTGaagcaagaaaagaaacaacttAACTGTCCCCAAAGTACTGTATAGTGTTGCATAGGTACAGTAACCGtcctgtatatttgtatatactggCATGAATTCAACAAACTTCAGTATGTAATCTTATTGCCAATCCTCACCTGTGCCACCTTGTGTGCTACGGGATCTTAATATTTTTGTCAGCTGATCCTATATATGGACAGGTCCCCTCAACACAATCCACAATGAGCTATAGAAGAAGGCTGCCAAGCAGGTGACAATGCACTGAACACGATGGACACTTCTGTGTTGATGAGGAATATTTTGGAACGTGCAGGTCGTTTTGGTGTGTCTATAGTACGATGCAAAGGGTTCAGCCGGCCCCCAACTGCACCAGCAGTGATCTGTACTATGTTAACAACCCACCCAGCCAGATTGgctcttaataaaaaataagtctCTCAAAAAATAAGTTGTCCATGCAAAACCTTATATTtagaaattgtatttgaaaactgaGAACTTCTGTAAGTGGTGATTGGGACACATTTCAACACCCACTCACTGAGTTTTTCCAGTATGTCAATGGAACATTCATGGAGAGACTTTATTAATAACTTAAATAGCTACTCCTAAATACAAATGCTCTCCTTCTAACTCCCTTTTTATCCCTGCCTATACAAACTGTCCTTGTGTtgaatacaatttgtaattttgttatgGACATAAGGAAAAATGAtgaattatagttttattttgttgtggattttgtatttaattgatttattccactgctttttttttttgtatccccaCCCCCAAACCAACCAAGCCCCTGATTGCTGCCCTATACCTGAGCCCTGTTACAAGGGAATCAGTTTAATCCAAATCCAAAGATCAGATGAaagaaagttattattatttcttggcagatgcccttaaccagggcgacttacaacataaattgAGGACAGCTCAACTTGCAGCTGCCACCACCATCATTGTGCCAATGACCGACTGGAGCATTGTGGGACTGATGGACTGGTGCTTCTGCAATACCGGTGGTGGTTAAATCCAGCTTGAGTCTGCAGACAGGACAGAGAGCAGTACTGAACTGAACATGGAGAAgctatgtattgcatttttggCTGTGTGGTGAGAAAGGGGTGTGCATCAGTGATTGATTGCAGAATGAATGGGAACTGAATAATAAGTGTAACCTATATTGTTAGCTGTCATTCTCAGACCACCCCATCCTCACCCTTAATTTTTCCACTGCCCCAGACCTGCAGGCATGGGTACCCACAATTGACACAAGCAGGTATTTGATTTTCCTTACACCCAGTATCAGCAGTAAAACTAGAAGACaaatagaaaaaggaaaacacaaaaatccacAATCCCAAGAACTCTATTAAAAGTACTAAAGTCTCATTCCTACTGTGCACAATACAGAAGGAGTCCATGAAAGTTTAGCTTCACTTAGGCTTCCCAGCTCTCCCTCTACACTGTATAATCATCCAAATCTGCAGTCTCCCAGGTAAGCTTAGTTTTCTCAGACAGTCAGTCTTTATCAACCTGTTTCCTGGCAGTAGGATAAATGACAACAAACACAGTGTCAGGGCTACAACATTACATgctaatacataatttaattaaccaaATTTTCTttctacacaaaaaacaatattaaaaaacaaagggatacaatttacacaatacaaCCCACAATAGAATACATCCAGAGCCGGGCAGCCCTATACGCTCACTACGCAAGTTGCGTGGGGCCCCGCAAATTACGCAAGGGCCCTGCCTCCCCCTCGTGTCAAAGCGGGCATCAATGTTTACAACTTCGATGAGAGGATGAAGAGGAACTATCTTCTGgtcatgaaaagaaaaacaaaacaaacaaaaaaaacaccatgaTAGTGAATTGCAGCAATCAGGAAAACTTGTGTTCTCTCCTCTCCAAGTTTGTGTCGGCAAATAATAGTAACGTTAAGTTGATGTACTAGCTTGCCGTGCATCTCACTCTAGTCTGTCTGTCTTACTAGCCTAGCTTGGCAGTGCATCTCttggtctgtctgtgtcttgcttGCTTGCCAGCCACTTCCAGGGCTGTGTTCTTTGACTTTGTGCCTGACAAAAGTGAGAGtgaaatacaactatttattacatttgaaaaatgccaATGGGCAACGGTGTTTATCAACTGTAGCTCGGAAAAGAGAACCGCGTCGTGCATGAACATGCGTTCATATGCGCATACACGAGATGAAACTTGCGCTTTCCAGCAGCAGCCTCTGTGGGGACCAGTCCAGACAATGTATGGGTGTGATGGCACTCCTTATAGACGTACatagttttaaaacaagacaGTGATCATCTAGTCTCTCAGTCAAGGTTTAGTTTATGTTTACATTGTATAGCCAAAGctaattgtataatattgtgAGGACTGGACTAATTACCAGACAGCAGAGCCAAAGtttagtattatattttattattttctacattttttgtattttgtacaattttgtatttatgttaatgttacaCATATTCACATATGTTCACATATTAAGATTATATAGAAAATATTctattcaataaatattg

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152604 lncRNA downstream 42996 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 224635 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 229461 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 325565 7561077 ~ 7562747 (-) True G121689
TU152218 lncRNA downstream 1464014 6420041 ~ 6424298 (-) True G121447
TU152667 lncRNA upstream 114398 8016064 ~ 8017075 (-) True G121789
TU152800 lncRNA upstream 923765 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 966979 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 1030497 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 1116460 9018126 ~ 9018327 (-) True G121935
AMCG00002230 mRNA downstream 16816 7870894 ~ 7871496 (-) True AMCG00002230
AMCG00002225 mRNA downstream 31793 7846338 ~ 7856519 (-) True AMCG00002225
AMCG00002223 mRNA downstream 51196 7826641 ~ 7837116 (-) False AMCG00002223
AMCG00002222 mRNA downstream 61755 7820512 ~ 7826557 (-) True AMCG00002222
AMCG00002220 mRNA downstream 87809 7796723 ~ 7800503 (-) True AMCG00002220
AMCG00002229 mRNA upstream 5369 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002227 mRNA upstream 36794 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002226 mRNA upstream 68237 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002233 mRNA upstream 111311 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002234 mRNA upstream 121011 8022677 ~ 8027024 (-) True AMCG00002234
TU152605 other downstream 48901 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 3668435 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4101768 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4172060 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 4760368 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1930245 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1940429 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3623227 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3766089 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3829951 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU1340 True 1518 lncRNA 0.38 2 NC_053112.1 2879059 ~ 2880672 (-)