RNA id: AMCG00002237


Basic Information

Item Value
RNA id AMCG00002237
length 1268
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00002237
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8496082 ~ 8522830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGGCCGGGATCTGAGAGCTACCCTGGAGGTGCCAGGATCCTGACAGCATGTTTCAGCGGACTCCCTGTGGAGTCTCAAATGGCTCTGAACCCTGAATCCTCGTTCCGGCCTGTTAGAACATCAGTACGTTCAATGTCTGCTTTAAGACCAGGGGGGGCAACTGGACGCCATGCTTGGATTCTTTTAGCTATGATCCACCTTACCATGGATTTCTCTTCCTGTAGCCCTGTAACTCCAGGCCCAGGATTCAAACTAATATCAAGGCCTTTGCTTCGACACAGACTAGGCCACAGCCCTTTGTGGGACACCCAAAATAGACCGCACTGGAGATTCCCAAACCCCTGGTGGCAGAGAGCTGCTCGGCCTGTGCTGCTGCATCAGGGAAAAGCAGCAAAAGGCTCGGCGCTCAGAAGTCATAAGCACAGAGGATCGATACATAAAGGCCTTCTTTGTAAAGAATGCCAGTCTTCATTTTCTTCCACTGAAATGTTGGACTCTTTGGTTTCTCGTGGGGGCACAAACTCAGACAAAGTGACCTTTTTGAAAAGGCCAAGGAGGCAAGTGAAGTGGGGTGATTACGAGTATAACCCAGAAGGGAGAACCACGACGGTGTCTGGATATATAGAATGGGGACCAACGGGGGGAGACGACACTAGCACAGTAGAGGACGATGGCAAGTCAGTCCCAAACTCCACGGTGTCTCGGAAACCCCAGTCCACCACCGCTGCTACGATCATCAGAACCACCATGACCACAAAGAGCCCcagaaaccccccaaaaaactattCTACGGTGTCCACGATGTACCCACAGAGACTcagcacaacacagaacagCATCTCCTCGGGTCAAACGGTCAAGCCACCTAAGCCATTTGGAGAGACGGCAGGTCTGGCAGTTCACCAGATTATCACAATCACTGTGTCTCTTATCATGGTCATCGCAGCCTTGATAACAACACTCAGTGGAAATGGACGACATAACAGCCATCAGAGGAAGATCAACCAACAAGAGGAAAGCTGTCAGAATCTAACCGATTTCACTCCGGCTCGGGTTCCCAGCAACGTGGACATCTTTACAGCCTACAACGACAGTTTACAGTGCTCCCACGAGTGTGTGCGGACAGCAGTGCCTGTGTACACCGACGAAATGATACAGCAGACCCCAGTGTATAAGACGACATATAACGGAAATAGACCTTCGCCTACCGAACGGCAGCTAATTCCCGTGGCCTTTGTGTCTGAGAAATGGTTTGAAATCTCCTGC

Function

GO: NA

KEGG:

id description
K21387 AJAP1; adherens junction-associated protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152667 lncRNA downstream 479007 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 650766 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 832405 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 837231 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 933335 7561077 ~ 7562747 (-) True G121689
TU152800 lncRNA upstream 302601 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 345815 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 409333 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 495296 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 615617 9138447 ~ 9213429 (-) True G122019
AMCG00002234 mRNA downstream 469058 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002233 mRNA downstream 481864 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002226 mRNA downstream 517000 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002227 mRNA downstream 551065 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002229 mRNA downstream 588504 7907035 ~ 7907578 (-) True AMCG00002229
AMCG00002238 mRNA upstream 183699 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002239 mRNA upstream 189635 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002240 mRNA upstream 287489 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002247 mRNA upstream 375795 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002249 mRNA upstream 411139 8933969 ~ 8946187 (-) True AMCG00002249
TU152605 other downstream 656671 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4276205 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4709538 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4779830 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5368138 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1309081 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1319265 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 3002063 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 3144925 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3208787 11731617 ~ 11734324 (-) True G122597

Expression Profile