RNA id: AMCG00002238


Basic Information

Item Value
RNA id AMCG00002238
length 993
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00002238
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8706529 ~ 8708937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTAAATTTCTGAATGTCCTGCTGGCTACCTTGAGCCGCTTTCTTTTCGCTGTCCATGGGGTAGTGACGGTGTGGTATGTGGTCAAGACAAAAGGAGACCCGGTTTATTGGCTGCTGCTGTGTGGCATTGCCCTTCTGGGAGTAGAGATGGCAGTTACTCTGAAGTGCACAAGGAAAGGCGAGTGGAAATGgTTCTCACCGATGGTGTTTCTGTACCTCAGCACGGTCATCCCTTCCATTTGGTTTCTGGAACTCAATCTGCTACAGTCAAGGCACCCGAATAACACGTCTTCCAAAAACGATTTACACCTATTAGATATACCAATACCAAGGGAGCTGACTCACCTCGGGCCAGAAAACTGGGCGGCTGGGCTGGAGCAGACCATGCTGATTGTGCTGGTTCTGGGACGCTGGCTGATGCCGAAGGGGGATATGTCTCGGGATCAGCTCTCCCAGCTCCTCATGGGCTACATGGGCCTGGGTGCTGACATCCTGGACATCTTTGACACCTTCAAGGAGAAGGAGGTAGAGAGCGACCGCATGATTCTGCTCATCGGACTCAGCCTCTTCACCTGGGCTCTCTTGCAGTTCCCCTTGGTGCTAACCCAAACCAACACTCCACATTCTCAGTCAGTCTCAGGCAGTCCCTCCGGGAAAGGCAAAGAGTCCAGTCTGGACAGAGCAGCGGCCAGTCGCTGGGGCCCCAGCTGCTCCACTGAGTTCTGGGCTTTACTGGTCACAGTGGGCATGCAGGATGGCCCCTTTCTCATCTACCGGCTCTACCTGATGATTCAGGAGCACGTACTGAACCAGATGATGATCTTCTTCACCTGCAAGAACATCCTCATAGTCCTTTTAGATATCTACCGCATTGTAGTCCAGTTTGAGAAACCCCCAGAAGAAGCCGTGACTGACCACAGCACCCCTTTCTACAGTGAAGAGCTGCAGAGACCAGAGGGAGATGATAAAGATCAGGAATCTCAAGCCTGA

Function

GO:

id name namespace
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152667 lncRNA downstream 689454 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 861213 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 1042852 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 1047678 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 1143782 7561077 ~ 7562747 (-) True G121689
TU152800 lncRNA upstream 116494 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 159708 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 223226 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 309189 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 429510 9138447 ~ 9213429 (-) True G122019
AMCG00002237 mRNA downstream 183699 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002234 mRNA downstream 679505 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002233 mRNA downstream 692311 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002226 mRNA downstream 727447 7969903 ~ 7979082 (-) True AMCG00002226
AMCG00002227 mRNA downstream 761512 7938460 ~ 7945017 (-) True AMCG00002227
AMCG00002239 mRNA upstream 3528 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002240 mRNA upstream 101382 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002247 mRNA upstream 189688 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002249 mRNA upstream 225032 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002251 mRNA upstream 248173 8957110 ~ 8982144 (-) True AMCG00002251
TU152605 other downstream 867118 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4486652 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 4919985 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 4990277 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5578585 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1122974 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1133158 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2815956 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2958818 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 3022680 11731617 ~ 11734324 (-) True G122597

Expression Profile