RNA id: AMCG00002240


Basic Information

Item Value
RNA id AMCG00002240
length 699
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00002240
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8810319 ~ 8813591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGAAGTTAGGACTTGCATTCTTACTTGGGGTGCAACTCAGTCAGTCTCAGAGCACCGTCGCCCGCAGTCACTCCTGCCTCTGCCACAATGACCCGGGTCCCTGCTCTCAATGCCCCAGCGTCCCTGTTCTTTTGCAGGCCGACACCCTGACTCCCGAGCAGGTCACCGAATACAAAGGTGTGTTTGAGATGTTCGACGAGGAGGGGAACGGAGAAGTCAAGACATCGGAGCTTGAGAAACTCATGAGCCTGATGAGCATCAACCTCACCAAGAGAGAACTGGTCCAGATGGCCAAGGATGTGGACAAGGATGGTAAAGGAGTCTTTAACTGCGACAGTTTCCTGGGCCTGATGGTACTTTATCATGAGAAGGCCAAGAACCAAGACGCTGAGCTCCGCGCCGCCTTCAAGGTTTTTGACAAGGAGTCCAAGGGCTACATCGACTGGGAGTCCCTCAAGTACGTGATGATGAACGCGGGAGAACCCCTCAACGCGGAGGAGGCCGAGCAGATGATGAAGGAAGCCGACAAAGACGGAGACGGAACCATTGATTAtgaaggtaaaataaaacacatccaATCGGACCTGATTGCCTGTCACACAAAAATCCCTCCACAGTGTCACAACAGAATTCGTGGCCATGATGACCGGAGACTCTTTCAAGATGACCTAATATCGAGACAGAAGGGCGAGTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152667 lncRNA downstream 793244 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 965003 7830193 ~ 7845316 (-) True G121754
TU152558 lncRNA downstream 1146642 7662986 ~ 7663677 (-) True G121718
TU152556 lncRNA downstream 1151468 7657832 ~ 7658851 (-) True G121716
TU152525 lncRNA downstream 1247572 7561077 ~ 7562747 (-) True G121689
TU152800 lncRNA upstream 11840 8825431 ~ 8859003 (-) True G121875
TU152811 lncRNA upstream 55054 8868645 ~ 8870698 (-) True G121885
TU152845 lncRNA upstream 118572 8932163 ~ 8933163 (-) True G121912
TU152874 lncRNA upstream 204535 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 324856 9138447 ~ 9213429 (-) True G122019
AMCG00002239 mRNA downstream 90202 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002238 mRNA downstream 101382 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002237 mRNA downstream 287489 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002234 mRNA downstream 783295 8022677 ~ 8027024 (-) True AMCG00002234
AMCG00002233 mRNA downstream 796101 8012977 ~ 8014218 (-) True AMCG00002233
AMCG00002247 mRNA upstream 85034 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002249 mRNA upstream 120378 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002251 mRNA upstream 143519 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002252 mRNA upstream 182111 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002248 mRNA upstream 205016 9018607 ~ 9022271 (-) True AMCG00002248
TU152605 other downstream 970908 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4590442 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5023775 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5094067 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5682375 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 1018320 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 1028504 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2711302 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2854164 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2918026 11731617 ~ 11734324 (-) True G122597

Expression Profile