RNA id: AMCG00002245


Basic Information

Item Value
RNA id AMCG00002245
length 5118
RNA type mRNA
GC content 0.52
exon number 37
gene id AMCG00002245
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8738771 ~ 8792478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGGCTCTggatgaagaagaagaggaagctACAATGCCAGTGGGATCCATTGGGGAGGAGGGTGAGACAGGTTTGCCCGAAGACTGTGGCCGTAGTAAGAAGAGGAGCTGCGCTGAGAGAGTGCGGATGTTCAAACTGAGAAGAAACCTGGACCAGTTGGACTCCTTCCACAAACAGAAGGAGCACGACGTTCTGAAAGCcagGGAGGAACTGAAGGCTTGCCGGCTGCGAATCACAGAACTGGAAAAGCAGCGGGACGCGGTGGAAGGAGAAATCGAGGAGCAGCTAGAGCCAGAGAACATGTCGGTATACATGCACATGGGCTTGGAAAAAGAAATCCATCAACTTCTGGTTGCAGCTCTGCTCCGCCTGAGGGCATTGCATAATCGGATTTGCATAGAGCTACAAGGGGAAGAGGACCTCGAGTCACAAATCGCATTGGTGCTGAGGGAAAACGAGCTGGAGCTGTGTCAGGTGGATGTGGAGCTGGGGCATTTCTCAGTCCTGAGACAGGACGTTCAGAGGGAGCTGCAGGCCTTCGAGGAGCAGCAGGAGCGAGAAGGGGCCCGCAGGCTGGAGCAGGAACAGGCGGCTGCACGGGGAGCCCAGCTCAGGAACCAACTGGAGAAAAAAAAACAGATGAATTCCCTGAAGCTGAGAGAGGCCCGATATCAGAAGGTAGTGGAGGAGGCTCAGGAGAACCACAAGAAGGCAGTTGTGTTTCTGAAGAAGACGATGAACAGAGTTCGTAAGAAAGAAGCGGAGGAAGAACTGAAGAGTCGCAAAGAGTTAGAGAAGCGAATGCAggctgttctctctctcaagaCCAGCATTGCAGTCACAAAGGAAAACCTCTGCACACTGCAAGCGCGTGATAAGGCCAAAATCACAGCcgagaaggaagaggagaggcTGCTGAGGGAGTCTGTGCGGGCCGAGGGAGGGGACGTCACCAAGTACACGTATCAGCAGAAACGATTGCGGgagtttgaaagaaagaaacaAGTATTGGAGGAGCATCAAAAATCCAGGAAGGTTGAAATCATCTCCAAGATCCTACAGGAAGAAGCCTTAATGGAAAAACGCAAGAAGGATCAACCTCAACTTTTTCCAGCCTCTAGGAAGAGCCTGAATAAGGAAGCTTTTTCTCGGAAGTCTCATGAGAAATTGTTGCAGTACTTAGACACAACTTTCAGGGAGAGTGAAAATGAAAGCTACACACCTGAGTGGCGTACCCCTTCTCCAATGTCAGAGGATGGGGATCCCTTGTCTGAAGATGAACTACTGTTTCCGGCAAAGCCATCTGCCTCTCTGGACTACACTGAAAAGATGAAAAGAGAAGATGATGAAgaggaaaaggagaaggaaGCAGAGGAAAGTCTTGCCTTACCTGAATTTACAGGACTGTGGGATCATAAGCATAAGCAATACAAGATACCTCAGGATGAGCCTTTATCCAAACCCGTCCATTCAAGCAAAATGGAGCAAGAGATTTTAGCCCGAACTCTGGAGAAACATCGGAGCACAATAGTCCGAAAGCAAGTGGCAGCTGGTAGAGAATTCAAAGGATGTCCTTTTTATAGCAAGCCAGAACTCATTCACTTCAAGGATTTTGACATAGGAAAGATATACAAGAAGAAGGTAATGCTGACCAACATCTCGTACGCTATAAATTTCTGCAAGCTGCTGGGAGTCAGCGAGCACCTGAAAGATTTCATTACCATCCACTTCAAACCGCCTGGACAGTTGTCTGCTGGAATGGCCTGTGATATGTTAGTTACCTTCAAACCAATGGTAAATAAAGATCTGGATGGAGAAGTGCAGTTCCTATCTCAAACGGGGCCTTTTTCTGTACCTCTTAAATGCACCATAAAGAAATGTGATGTGAGTTTGAAAAACATCAGTCCCGCACCCCTAGATcccaGCAAGGGAAAGCTCACTATTTGTCTTGCTCCTTCCCTCAAACAGCTGGTCGTGGACAGCAGGCTCATTGACTTCGGTACCCATGTGGTGGGGGAGACAATTTCACGGGCAATCACTCTGACCAACCGAGGGGCCCTGGGAGCACACTTCGTTCTGGTGACATCATCGGACTCCGGCGCCGTCCAGCTAATATCAAGGCCCTCCTCTGTGCAGCCAGAGGTGATGAGCTGTGCTGGGGTTGTATCAAAACAGCAAGGCAGCACTGTGCAGCTGGAGTCTGGAGAAGAAGGTCAACAGACTGGCAAGAATCAGGAACCATCCCATGGTACACTCTCTCTTAGTGATCAGACGCTGGTAGGGCCTGTGGAGCCAGCAGCAGAGGTAACTACTACAGGAGAGAATACGGGAGTGCTGCTGGGGTCCAGGCAGCAGGACGCATTGGAGACCACCGAGATCAGGCCTGGAGAGCTGAGGGAGGGTGAAATTGGCCCCTTCGGATGCGTCAAACTGCAGGTCATTTTCACTCCAACCATCCCTGGAGAAGTTCAGATGGACTTCGATATCAAATTCTCTGACGCCAGCTCTCCACCAATCCCCATTACAGTTCGAGGAGTTGCTATTGATGTGCCTGTATGGGTGGCGCAGCCAAACATTGACTTGAAGATCTGCATGTACAATCGCCTTTATCAAGACAGCATCGTTGTACATAGCAGGGCGAACACTGCTCTCCGCCTCACGTTTGAGGTGTGCCAGGAGCTCAGGAACCACATGGAGATGCTTCCTAAAACCGGCTACATCCAGGCCCAGTCCACCTTCAATGTGCAGCTCAAATTCCTGCCCAGACATTCCTTACCTATGGATGCTGAGGGATACTTTGATAAAGAAACAGGTGTCTTAGAAGTCCCTTTGACAATACAAGTAGCAGATCAGGCCCGCCCTGTCCTGTTCATCGTCCATGCTGTTGTCACGACTTCTGACTTGGAGTTTGACAGGACTGAACTGGATTTCGGACACTGTTCCATCTATGAGTCCGTCAAGACCAGTGTCCGCCTCACAAACCACTCCCTTCTCCCTCAGGAGTTTGGCTTCGTGGGAATCCCGAAGTCTGTCGATGTCCAGCCCAACGATGGCTTTGGTACTGTTCTTCCTCGGGAAACCTTGCAGATCGATTTCATATTCAGTGCAAAGAAGGCGCGAGAATACAACTTTGAACTGACCTGCAAATCCGGCATCAACAGAGATTTCAAGTTGTCCTGTAAAGCAGTGGGGGTCCACCCACCCTTGGAGTTGTCCCACTCTTTAGTAAAGTTTGGTGCGACTGCGGTGAATGACACATCCGTGGCTGCTTTGTACGTGGTGAATTCTCACACCAGCCGCAACGAGTTCTCCCACCCCGTGCCCAGGATCAGCAAGGGGGAGATCGCACCTGTGGGACCCACTTCATTTGAGTTTGTCATCCCGGAGAATTCAGACATCACCATCACCCCAGCTGTGGGGACTGTAAAGCCAGGCAAGAGGTGCCTGGTCCAGGTGTACTTCAGGCCTGATCTCCACAACGAGGCAGTCAGGGAGGAGGCTGTTCGTTTATTGTGTCAGGCTGAGGAGTTGCGGGAGCTGGAGAGAACCGAGAAGGAGGCGGCGAGCACCAAAAGTGCTCAGCTGGAGGCAATGAGTGAAAAGGAGACTGCATCTGATCtgaagaaagggaaaaagcaGGCCAATCAGGGCTCGGCTAAGCGCTCCGCAAAGGAGAAATCCAACAAAGAGTGTCTCTCACCCAAAACCTCCATCCCCTTCCAGCCTCCTAGTCTGGGAGATATCCACCACGATTCAGATACATATGCTGCAGGAAGAGCTTCCTTAATCCGCTCTTTCAAGGACTGTTTTAAGACCTACACCATCCCCTGCTTCATCACTAGTGGAGAGGCTGCCGAACACAAGGAACCTGGACATCTGCAGTACAGTCCCTACAATACTCTGTACCTGGAGCTGCACTGCCCCGTGGTAAGACCCCCTCTTGTGGTCGTCTCAGACAATGGCAGGACGGCAGTGAACTTCAGTGAGGTGGCAACAGGTCACAAAGTTGTACGGAGGGTGACAGTGCAGAATATTTCTCATGACTCTCTGGAGTTGTTTCTGCAGCTGAGGTCCTCAGTTCTTGATCCCAATGGACCTTTTGTACTTCTGAACGCACTAAGGGCCCTTGATCCAGGAGCCACCCacaccctcctcctctccttcactcccgCCAAAGGGAAGAAGGCaagttgtTACTATGAGACCTTGGAGATCCGAGCCACCACGATGACCCTGCGACTGAACCTCTCTGGCGTGGGTTTAGAGCCTTCTGTCAGCTGCTCAGTCGAGGGAGGCATCCTCCGTTTCGGCTACGTGATAGAGAACGAAAGTGCGACCCAAGTGTTTAAGTTGCACAATACCTCCTCCCTCGTGGTGAACTACAGTGTGAAGCTGGACAGCTGGTCTCTCACACCGCAGAAGGAGGCACAAGGCCTCCCACCCTTCCTCTACACAGGCACACAGCCGCAGACTCTCGTGGGCACCCAGAATTACAGCGGCCTCAGTGTATTCAGTGTATCGCCCTTAGAGGGTGCAATTCCCCAAGGCAAGACCCAGGACATCACCGTGACTTTCCGGCCAGACCACCAGAGTCTCTACTACTCCGACAGACTCAAGGTGGAGCTCATGAACAAGCAAACAGTGCATGAGATTCGGCTGAAAGGAGCCGCCCGCAGCCACACCATGTTTCTGAGTGGAGGAGACCCTTTGGACGTCCCTGTCGAGTCCCTGGCCTTTCTCCCCACCAATGAAGACCCAGACAGTGCAGAGAGACCATTGCATCCTGTCCTCCTGACCCTAAAGAGTGTGTCCGGCCACGACACTGTGACCCCAGCCGTCCGGGAGCTGGAAGTGGGGTGTATCCGGTGCACACGACCCGTGGCTAAAAAGAACGTGGAGTTTAGTTGGGATAATCTGCCAGCCCTACAGCAGAAAGGATTCAGTGTGGATCCAGCGAGAGGAACAGTAGATCCAGGACAGAGGAAAACAATAACTGTGATGTGGGTGCCCCCCAGTGGCCAGGATCTGTCTCagcctctctgtgtctcagcaCCTCTGACCATGAAGGGAGATGTGACTGAGGTCTACAACATCACCCTGCTGGCCCTGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152632 lncRNA upstream 785147 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 821528 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 904560 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 1090455 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 1176039 7561066 ~ 7562732 (+) True G121680
TU152769 lncRNA downstream 24987 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 456974 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 751272 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 833901 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 837255 9628598 ~ 9628833 (+) True G122063
AMCG00002235 mRNA upstream 559824 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002236 mRNA upstream 586917 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002231 mRNA upstream 716393 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002232 mRNA upstream 728231 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002224 mRNA upstream 800838 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002241 mRNA downstream 14773 8806116 ~ 8809795 (+) True AMCG00002241
AMCG00002246 mRNA downstream 68090 8859433 ~ 8867964 (+) True AMCG00002246
AMCG00002244 mRNA downstream 82447 8873790 ~ 8893838 (+) True AMCG00002244
AMCG00002242 mRNA downstream 115590 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002243 mRNA downstream 130571 8921914 ~ 8933126 (+) True AMCG00002243
TU152502 other upstream 1342210 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2136163 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2136163 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3515273 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 5199217 3537619 ~ 3539554 (+) False AMCG00002098
TU153130 other downstream 1052937 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1052937 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1776569 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2585597 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2837669 11629012 ~ 11630892 (+) True G122482

Expression Profile