RNA id: TU152752



Basic Information


Item Value
RNA id TU152752
length 377
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00002245
representative False

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8738771 ~ 8792478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGTAATGCTGACCAACATCTCGTACGCTATAAATTTCTGCAAGCTGCTGGGAGTCAGCGAGCACCTGAAAGATTTCATTACCATCCACTTCAAACCGCCTGGACAGTTGTCTGCTGGAATGGCCTGTGATATGTTAGTTACCTTCAAACCAATGGTAAATAAAGATCTGGATGGAGAAGTGCAGTTCCTATCTCAAACGGGGCCTTTTTCTGTACCTCTTAAATGCACCATAAAGAAATGTGATCTGGTCGTGGACAGCAGGCTCATTGACTTCGGTACCCATGTGGTGGGGGAGACAATTTCACGGGCAATCACTCTGACCAACCGAGGGGCCCTGGGAGCACACTTCGTTCTGGTGACATCATCGGACTCCGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152632 lncRNA upstream 800102 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 836483 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 919515 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 1105410 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 1190994 7561066 ~ 7562732 (+) True G121680
TU152757 lncRNA downstream 28222 8790301 ~ 8792478 (+) False AMCG00002245
TU152769 lncRNA downstream 54251 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 486238 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 780536 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 863165 9625244 ~ 9626221 (+) True G122058
AMCG00002235 mRNA upstream 574779 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002236 mRNA upstream 601872 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002231 mRNA upstream 731348 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002232 mRNA upstream 743186 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002224 mRNA upstream 815793 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002241 mRNA downstream 44037 8806116 ~ 8809795 (+) True AMCG00002241
AMCG00002246 mRNA downstream 97354 8859433 ~ 8867964 (+) True AMCG00002246
AMCG00002244 mRNA downstream 111711 8873790 ~ 8893838 (+) True AMCG00002244
AMCG00002242 mRNA downstream 144854 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002243 mRNA downstream 159835 8921914 ~ 8933126 (+) True AMCG00002243
TU152502 other upstream 1357165 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2151118 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2151118 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3530228 5218830 ~ 5223498 (+) True AMCG00002152
TU151430 other upstream 5214172 3537619 ~ 3539554 (+) False AMCG00002098
TU153130 other downstream 1082201 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1082201 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1805833 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2614861 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2866933 11629012 ~ 11630892 (+) True G122482

Expression Profile