RNA id: TU152757


Basic Information

Item Value
RNA id TU152757
length 1472
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00002245
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8738771 ~ 8792478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGCATCCTGTCCTCCTGACCCTAAAGAGTGTGTCCGGCCACGACACTGTGACCCCAGCCGTCCGGGAGCTGGAAGTGGGGTGTATCCGGTGCACACGACCCGTGGCTAAAAAGAACGTGGAGTTTAGTTGGGATAATCTGCCAGCCCTACAGCAGAAAGGATTCAGTGTGGATCCAGCGAGAGGAACAGTAGATCCAGGACAGAGGAAAACAATAACTGTGATGTGGGTGCCCCCCAGTGGCCAGGATCTGTCTCagcctctctgtgtctcagcaCCTCTGACCATGAAGGGAGATGTGACTGAGGTCTACAACATCACCCTGCTGGCCCTGATTGTGAGAGCGTCTGGATTAGCACAGGAAGTGTGAGATCAGCACAGAACTGAAAGATGATAAAATTATACCATAATGTCTGTGTTGTACAAAAACAATTGAGAGAAGATAGGTAGACAGACAGTGATAAATAGACAgtgcaaatctttttttttataatttaaatcattaaaaaaaaacatattatttatctaatttatctataaatgtatatacactataagtacatttttaagGAATAATACAGTGAGGATTTACTTTTACCCCAGAGCTCAGTAGTGccacatattacatatatttctgcTGACAATTTATATACTACAGCACACTTACACAGTGCTAGGGGAGAACCCAGATGAGCAGCCAAGGAGGACAGAAAATGATCCCCcatacagttttattattaaagaaaaatccATTGTTAACATGCTGTGAATTCAGTACCTTAGATAAGACTAATAACTTGCGTTAACAGGGGAGTAGGGCATTAGCCATTCCTCCATTGCTTTCTGGAGAGGACCACCTGCATTCTTACCAGCCATGCATTCCCCTCGCAGTTCACAAAGAAGTGTCCTACTTTCTTCCAGatgtttattaacttttttgCCTTGGTTCCTGTTTTGCCTGTGGTCTTTTTGTTTGAGAAGGTGTCTTGCTCATATTTTACTTGCCCTGTGCAACAACATCCATCATTGTCCCAGACAGGTGCCAGATATATTGGGAGAGAATGTGATGGATGAATATTGACAACTTTACTCTGTTGCTTTGAACAGAAAACGAAATCAACGGGTGTCACTCTTTGGTAAACTCCACAGCAATATACatcagatgaaaagaaaaatttTGTATTGAGAATGTATAGGTAGGGATAAGACCAGTTATTCTAAACCTACTGTTTAGgtgtaaatgttaattacaaCAATGTGAATCTGTGGGAATGTCTTGTCACTTTAACTTGCGatgcaaaaataaacttcaTCTCAATCTCAAAGATCAGAGTTGTCTGCTGCATTGACTAAAATTGGATGGTTTTCTTTAATTGCAGCACAAACACCTACTTCATGAAACACAGCCTTACTTGTTTCAGCAGGACATGGGCTGAAAAACTCCTCTGCCCTCACTTTAAAAGAAGCAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152632 lncRNA upstream 836677 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 873058 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 956090 7829807 ~ 7834211 (+) True G121722
TU152524 lncRNA upstream 1141985 7646718 ~ 7648316 (+) True G121688
TU152516 lncRNA upstream 1227569 7561066 ~ 7562732 (+) True G121680
TU152769 lncRNA downstream 23852 8816330 ~ 8816553 (+) True G121862
TU152927 lncRNA downstream 455839 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 750137 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 832766 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 836120 9628598 ~ 9628833 (+) True G122063
AMCG00002235 mRNA upstream 611354 8161326 ~ 8178947 (+) True AMCG00002235
AMCG00002236 mRNA upstream 638447 8128197 ~ 8151854 (+) True AMCG00002236
AMCG00002231 mRNA upstream 767923 8016893 ~ 8022378 (+) True AMCG00002231
AMCG00002232 mRNA upstream 779761 7980304 ~ 8010540 (+) True AMCG00002232
AMCG00002224 mRNA upstream 852368 7927590 ~ 7937933 (+) True AMCG00002224
AMCG00002241 mRNA downstream 13638 8806116 ~ 8809795 (+) True AMCG00002241
AMCG00002246 mRNA downstream 66955 8859433 ~ 8867964 (+) True AMCG00002246
AMCG00002244 mRNA downstream 81312 8873790 ~ 8893838 (+) True AMCG00002244
AMCG00002242 mRNA downstream 114455 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002243 mRNA downstream 129436 8921914 ~ 8933126 (+) True AMCG00002243
TU152752 other upstream 28222 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 1393740 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2187693 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2187693 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3566803 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 1051802 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 1051802 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1775434 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2584462 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2836534 11629012 ~ 11630892 (+) True G122482

Expression Profile