RNA id: AMCG00002248


Basic Information

Item Value
RNA id AMCG00002248
length 2588
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00002248
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9018607 ~ 9022271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGGTGGGACAAGATGGCGGCTCCCAGGTGGTCATTTTGGACTACATGTCCTCGGACCTGACACGTAATCGGAATAAGATTGAACAACAGCTAACGGTTAGAATAGAGAGATTAATGATGTGGTTGCTAGTCAGTATAACAGTGTTAACCAAGACAACAAGAAGAGGTGGAGCAATGGCAGAGGGGGATAAACCCAGCGTCGAATTGGAGACTTTAATCCCAGAGGGACTGAATGGGCAGAGCGCTGCTAGAGGGGAACCAAGAACGAGCGATTTGGACTGGAACCAACTGGAGGGGAATGCTGGCGGGGAGGGCAAATTGAAGCAGAAATGTGCCGCCTATGTCCTGGCCCTGAGGCCGTGGAGTTTCAGCGCCTCTCTGACCCCGGTGGCTCTGGGCAGCGTGCTGGCGTATAAGTCAGAGGGCACCATCGACTTTGTCATACTGGTGGTGTGTGCTGTGGCCGTGCTGTTGGTGCACGGGGCCGGGAACCTTGTGAACACTTACTATGACTTCTccaagggcatcgaccacaagAAAAGCGATGACCGGACTCTGGTTGACCAAATTCTGAAGCCCCAGGATGTAGTTATGTTCGGGGCTGTTCTTTACTCCTTGGGATGCTTGTGTGCAACCTGCCTGTATTTCCTCTCCACCCTGAAGCTGGAGCACCTGGCCCTGATTTATTTTGGAGGCCTGTCAAgaaTCGGTCTGAAATATGTTGCCCTCGGCGATGTGGTTATCTTGATCACCTTCGGCCCTCTGGCGGTGATGTTCGCCCATGCGGTTCAGGTGGGTTACCTGTCCATCGTGCCGCTCCTCTATGCCATTCCCTTGGCACTCAACACGGAAGCCAtcctgcacagcaacaacacgCGTGACATGGATTCGGACAAACAGGCTGGTATTGTCACCCTGGCCATTCTCATTGGACCCACGCTGTCTTATATACTGTTCAACCTGCTCCTGTTTGTCCCCTACATCATGTTCTCCATCATGGCCACCCGCTACACCATCAGCATGGCACTGCCCCTACTGAGCCTGCCGATCGCCTTCCCCCTGGAGAAGCAGTTCAGGAGCCAGTACTACTCCAAGATCCCTCAGAAGACCGCCAAGCTCAACCTGTTAATGGGGCTTTTCTATGTCTTCGGTATTATATTAGCACCACCGGGCACCCTGCCAAAACTCTAATCCTGCCAGTTGTACTAACTACAATTTTATGtggatttttatatttgtggagactttcatacatttctggggctttcatttcatttatttatttatttttgtatttagtaaaaGATTTTGCAGCTTTTAGTAATGGAAATGATTgtgcccttttttttttgtgggcaCTGAAGGTCACAGAATGAATCCCTTTAGCTGTTGTACAGTACAGAAGTTGCATTTCTTGGGCTTGATTAaatactgcaaaaacaaaagtgggGTATAGCAAAATAGTTTAGTCCCATATTTAgcatttagttaaattaaaacgCATCACACAGCTAATGGCTCAGACATGAGTAAGTGTTACTCATCTTaagattacaaaaatattgatACTGATAAGTATACATCGATTCAAATGGGAATACATTGTTTGAATTTTGAAGCAGAAGAAGCCATAGATCACATGACGTAGTGTTTTTGTCATCACAGCTTGAATGGAAGTGATTGAGCCAGTAAATGTCTTTCCcatgtgtgcgcgtgtgtgtatatacacacacacacacacacacacacacacatttagaatatttgttttactaaaaTGTAAATCGTGAAGACAGCGTTCATTGGATATTTTTATATGAgcacttaaaattaaaatggggttctcctttctgttttttatttattctgtgatttAGATGTCCACTTGAAGAATATTGCCATATAGTGCCTATTCATAATAGAAGCACAGAAAACTGATTTGTGTATCTTCTCATGCTGGACTTACTCTATGCACTTTGTGTCCTAATTCCCAGGAGTTCCAGggaatggattttgttttccactcGTACATTAACTCACCATTTAATCAATCATTTTGTCTGGAATGCCAAAGAGCATTCTGTACTATTGTTGGTACAACAGAAGAGCTGGACTTTCATGTAAAAAGTGTGTAGGTGAACACTTTTATCATGATCTGATCTTCATGCCTGTTATTAAACCAAAAGAAAACTGCACCTTCAGTATCTGTTGGATTATTTTATActccatttgtttttggttcGTTTCTGCTGTAGAAGATCACCTCCATGTTCGATGTTGCGAAAGAGGTTCTGAACAGACAGTTTGTTATATTCCTGCATCAAAATGTCTGATAGCCAAGAGATgttacgcacacacacacacacacacacacacgtacacagtGCTGGAATGAAGAGGTAATAGAGGGAAACTCCATTCCTGTTGTTAACTGAAAGAAGACCGCAAATCCCCTTTCACACGGGTGAATCGAAGGAGGTTGTGGACAATCATATGGCTTCATCCAAACGTACAAggattattagtttaatttggATTAGTAATGTAATTatcatttgcaaaataaatatttaaaattaaatgttag

Function

GO: NA

KEGG:

id description
K00810 UBIAD1; menadiol prenyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152874 lncRNA downstream 280 9018126 ~ 9018327 (-) True G121935
TU152845 lncRNA downstream 85444 8932163 ~ 8933163 (-) True G121912
TU152811 lncRNA downstream 147909 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 159604 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 1001532 8016064 ~ 8017075 (-) True G121789
TU152969 lncRNA upstream 116176 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 261698 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 589791 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 598757 9621028 ~ 9621472 (-) True G122061
TU153107 lncRNA upstream 735154 9757425 ~ 9775995 (-) False AMCG00002275
AMCG00002252 mRNA downstream 12720 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002251 mRNA downstream 36463 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002249 mRNA downstream 72420 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002247 mRNA downstream 115019 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002240 mRNA downstream 205016 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002250 mRNA upstream 33043 9055314 ~ 9061095 (-) True AMCG00002250
AMCG00002260 mRNA upstream 170928 9193199 ~ 9193429 (-) True AMCG00002260
AMCG00002259 mRNA upstream 178315 9200586 ~ 9208699 (-) True AMCG00002259
AMCG00002263 mRNA upstream 287145 9309416 ~ 9356970 (-) True AMCG00002263
AMCG00002265 mRNA upstream 586479 9608750 ~ 9620127 (-) True AMCG00002265
TU152605 other downstream 1179196 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4798730 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5232063 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5302355 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5890663 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 809640 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 819824 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2502622 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2645484 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2709346 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071883 True 2232 mRNA 0.47 3 NC_007119.7 53918234 ~ 53926228 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_00818849_00822703.mRNA True 1456 mRNA 0.51 2 CI01000050 818849 ~ 823139 (+)