RNA id: AMCG00002249


Basic Information

Item Value
RNA id AMCG00002249
length 3419
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00002249
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8933969 ~ 8946187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTGTCCGCTAGTTCAATGAAAGCAGACGCGGATTGTTCAAAGCTTCATTTCTATGAGTCTCGCTTATATTATGGGCACTTTCATCAGATGCCTTGATGGGTTAATCTGTTTCTTCTCTGCAGAAACTGTCGACGCATGTGCAAAAACTGAGCTGAGGCCAGAAACCGTTTTCAGTTCAAGATGCTCCAGCTGTTTTCCTTTGCCTTCACGTTGACGAGCGCTGACCGCCGTGTACAGTAATGTGATCCTCTGCGCGTCTCTGGTGCTCAAGCTGCCTGTCCGGTGAAGTGGGACGGGGGCTGCGGTGCTGGCGGTGAAGACTTGCAACACCAATTCAGTCAAACACAGGTTGAAAGAGTGTTGCAAGAAGAAGATGTTTGACCGGTCCTAGCAAACGGTGGACATATGACTTATTGTGCGTCTTTCCAAAGGAGAAGCTGCGCAGTCGGCACGCCGGCGATGCAGTGTCATCTGTCCGCAGGCGGGCGGCGGGGCGACCCCGGGCTGCTCCTCGCAGTGTCGCTGCTGGGCGCCGCGGCTCTGCTCGCTGGGATCCAGGGGGCCTCCGCGCTTCCCATCTGGAGCTCGAAGGAAGAAGCTCAACCCTCCAGCGTGTTAGTAATTGGATTTCGACCCGAAGCCCTGTCTCGAGTGCTCCGTCTCTCCCGCAACAAGCGCTACACTCTCACCCCGGAGAAGTTAAAATGGGACAAGTTCAAGCTCACTTACAAGCTGCTGTCATTCCCCAAAAACCTGATGAATGCCAGCGACACGCGTAAAGGGATGGCCAGGGCGTTCAGCATGTGGAGCGATGTCTCTCCCTTCAGCTTTAGGGAGGTTCCTCATGACCAGGAGGCTGACATCAAGATAGGCTTTTACCCCATCAACCACACAGACTGCCTCAAGTCCTACCTGCACCACTGCTTCGACGGGATCACTGGGGAGCTGGCCCACGCCTTCTTCCCCACAACGGGAGAGATTCACTTCGACAACGAGGAGTACTGGATCCTGGGAGACATGCACTTCAGCTGGAAGAAGAGAGTGTGGCTGACAGACTTGGTCCATGTGGCGGCACACGAGATTGGCCACGCCCTGGGCCTGATGCACTCCCTCAACCCCAAGGCCATCATGCACCTCAACGCCACACTCACTGGCAGGAAACGCATCACCCAGGATGACGTGTGGGGCCTCCATCGGCTGTATGGGTGTCTGGACAGGTTATTCATCTGTCCTTCTTGGGCTCGGAAAGGATTCTGTGACAGCCAGAGAAAACTGATGCAAAAGCACTGCCCTGCTAGCTGTGATTTCTGCTACGAATTCCCCTTCCCCACTGTGGCTCCAACGCCTGTTCCTCCCAGAACCAAGACCAAGCTGGTCCCTGAGGGCAGGAAACTCACTTTCCGCTGTGGGAAGAAGGTGGCTGAGAAGAAAGGCAAAATTTACTGGTACAAAGATGGAGAGCTCCTAGAGTACTCCCAGCCCGGGTACATCTCCCTGAAAGACGACCATATAAGTATCGTTGCCAACGCCATCAATGAGGGCACCTATACCTGCATCGTGAGGAAACGCAACAAAGTCCTTACCAACTACTCTTGGAGGGTCAGGATTCGATTCTGACCAGAGTGCAGTCACCCACCCCATGCATAGAGCACTGTGGACAAACACGGAGGAAAAAGCTACAAAATTAAGCCCCTGCTTTCCAAATCTAAagcaccacccccccccccccccccccccccccccacacaaccTTTGCTAAGAGTTTTTGTTGGTCTTTGTTTAtggtttttggtttgattttgaaatgagaTGGCTGTCTTGATTTGTAAGATGGTTGCAATCcaagtaaaacatttgaataaaaaaagataaaacccTTCTGGAGCTTGACCAATTGTACAACTCCTATTTGTTGTCTTTGAAACTCCCATGCCAAAGTTTGAAATTAATATACGAGTAGGAGATACtgataaattaaagaaacaaagaagaaaacattcctactgaattacacaatgtactgGCTCagatttttcaatttgtattgtttatttttcttgtactgGTTTACAAGTACACAGGACTAGCAATGTCACTGCATTTCCACTCAGATCACTATCCTATACTTATTGGTATTATTGGAAAATTGGCGAGTTAATGTCAAATAAAGGTATCAAAATTCACTGAGcacttttgtttgattttgatcATGTAGTGTcagttttaaaattgtgtttttgtattatgtcAATCTGTTTGTTCTTGGTCGGAAAAGTGGAAAGTATTGTTTGCCACTGTAATTTTAGTCACACTATCTGGCAGAAAATTATGTTTATCAGATTTGTCCCTAAAATATGAATCCAGGATTACTGCAATTTGCTGTCTGATTTTGATTCATGGATTTTGAGCTTTTTGTAATTCTCTCTTAAATTTAGGTtacatatgcattcattttctacTTTAGGATAGAGACTGTTAATGAATCACAAACGCAAGAAGGCATATCAGTGAGGGAGGAGGTGCTGTTTAACTTAATAGATGAAATCGCAGTGTTTAGAGACTTCCCAAAGCCATTGACTATCATCTCCTAACTCCCTGCTGGGGCTACAAGATGAAATCTAGGTTCAGGGCCTACAGTTTTTAGTCTATGAATCAAGAGGTTTGCCGACTGTTAGTTCCAAGTAATAATTTCCTGCAATCAGAGACTTGGCTCAGAGTACTTGCTGTAGGACTGGGGCTTggaatttaaaattgtaataaaaactgaaattaaagttCTTACACAAATACAGAACCAAAACTGTGGACAATATTCAAAGCTTGCCAAGTTAAGAAAGCTGAAAATATGTGTAGACTAAACAACTGGGAGAAACCTGGTTCTCCTTTCTCAGGGGAAACCTAACCCTTACACTAGCACAACACAAACCATAACCCTAGTCTAGTCTGAATGAAACCTTGACCTTTTGTTTTTAGTGTACAATTAAGCTGAACTAGTGGAAATACTACTGTAAAGCAATAAAtagaattgtaaaataattctTAGCTTCTCTTTGATCCATTCTTCACACTTATCAAAAACTTTACCCTGAAACAGCACAGTGGTACAATTACCCCTTAGGCAGGTCTGAAACAAGGCTGAGTGGTAGATGGTTTTCTTCATGGTAATCATCTTTATGGGCATTAAGTCCAATATAAGACTCGTTGCTTGGGGTGGATGATCATTAGACGatagaataataaaatgacagttATGCAGTTATTTCATGAGGGCAAGTTACATTATGTGCTACATTTCCTTCCCATTCAATTTATAATGGCAAAGATGCCTTTACTGGACAATGCATTACTTTCCCCCCTTGGCTGAATTACTTGCATTTAACTTacataatgaaaaatgacaagTTTCAAAGTCTGTC

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08001 MMP23; matrix metalloproteinase-23 (CA-MMP)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152845 lncRNA downstream 806 8932163 ~ 8933163 (-) True G121912
TU152811 lncRNA downstream 63271 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 74966 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 916894 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 1088653 7830193 ~ 7845316 (-) True G121754
TU152874 lncRNA upstream 71939 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 192260 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 337782 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 665875 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 674841 9621028 ~ 9621472 (-) True G122061
AMCG00002247 mRNA downstream 30381 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002240 mRNA downstream 120378 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002239 mRNA downstream 213852 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002238 mRNA downstream 225032 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002237 mRNA downstream 411139 8496082 ~ 8522830 (-) True AMCG00002237
AMCG00002251 mRNA upstream 10923 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002252 mRNA upstream 49515 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002248 mRNA upstream 72420 9018607 ~ 9022271 (-) True AMCG00002248
AMCG00002250 mRNA upstream 109127 9055314 ~ 9061095 (-) True AMCG00002250
AMCG00002260 mRNA upstream 247012 9193199 ~ 9193429 (-) True AMCG00002260
TU152605 other downstream 1094558 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4714092 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5147425 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5217717 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5806025 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 885724 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 895908 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2578706 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2721568 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2785430 11731617 ~ 11734324 (-) True G122597

Expression Profile