RNA id: AMCG00002251


Basic Information

Item Value
RNA id AMCG00002251
length 2529
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00002251
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8957110 ~ 8982144 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAATAGGAAGTTCCTTTGCACAGAGGTCAGACCAGATCTTCACTATCAGGGTTACCTTGGTCCCGCGGCAGAACCTCTCCCGGATCATCTTGAAGGGCATATTCCAGGGTGTGAAGGTGGTGCGAGGGCCTGACTGGGACTGGGGCAACCAAGACGGGGGAGAAGGGAAGATTGGGAAGGTTGTGGATATCCGCGGATGGGACACGGAGTCGGGGCGCAGCGTGGCTAGTGTGACCTGGGCCAATGGCACCACCAACGTCTACAGAATGGGTCACAAAGGCAAGGTGGACCTAAAATACGTCTCTGACATAGCAGGGGGACATTACTACAAAGATCACCTTCCCAAACTAGGGGAGCACGCAGAACTGCAGAGACAGGAGAGTGCAGATGGACACACCTTCCAGCAAGGGGACAAGGTCAAGTGTCTTCTTGAGGTGGACATCCTCCGGCAGATGCAGGAGGGCCACGGAGGATGGAACCCTAAAATGGCTGAGTATATTTGCCGAATAGGGACTGTGCACAGGATCACTGACCGAGGGGATGTGAGGGTGCAATACAGCAATAACATCCGCTGGACATTTCACCCGGGGGCCTTGACTAAGATGTGCTTCCCCCTTCCCTCTGCCCAGGTAAACACATTCGGGGTGGGAGACCTGGTCCGCGTGCTGGACGACATGGACAATGTGAAGCGTCTGCAGGCCGGACATGGGGAGTGGACAGACAGCATGGCCCCTGCCCTGGGGCAGGTGGGTAAAGTGCTGAAAGTGTATGCGGACGGTGACCTGAGAGTGGCTTTTGGAGGCCAGACTTGGACCTTTAACCCTGCGTGCCTCACCGCTCAGCCTATCGAGATGGACGCCAACCTCATGACCACCGAAAACACCAATGAATCAGGAAGCACGGTCATCTCGGTGCTAGAGAAGCTGCTCTCACAGTCCACTGAGCAGGACAACCCCAGCCGGCTGGTGATCGAAGCCGCACATGGCAGTGCCAGCAAAGTCCAAGATCTAGTGCAGAAGTATCCAGAAAAGGTGGACATTAAGAATCAGGGCAAAACCGCATTGCAAGTGGCTGCTCATCAAGGTCACATGGAGGTTGTGAAAGTCCTGCTGCAGGCCAACAGCAACATCGAGGTGAAGGATGAGGATGGAGACACTGCGCTGCATTACACAGCTTTTGGGAACCAGGCTGAGATTGCGCGACTGCTGCTTAGCAAAGGTGCCAACGTGAACCTGCTGAACAACTCCATGTGCACGGCCCTGCACATCGCCGTCAACAAGGGCTTCACCGAGGTGGTGAGGGTTCTGTCGGAGCATAACGCTGACGTCAACCTGCAGGACTCCTATGGAGACACGCCTCTTCACGACGCCATTGCAAAAGACTTCAGGAACATCATTGAGATCCTCACAGAGGTGCCCAACATCGACTTCACCCAGCAAAACAACAGAGGCTTCAACCTGTTGCACCACGCTGCACTGAAGGGCAACAAGCTAGCGACTGAAAAGATCCTGGCACGAGCTCGGCAGCTAGTGGACGTGAAGAAGGAAGATGGCTTCTCAGCCCTGCACCTGGCGGCCCTCAACAACCACCGAGACGTGGCTGAGATTCTCCTCAAAGAGGGCCGCTGTGATGTCAACATCAGGAACAACAGGAACCAGACGCCCCTGCAGCTGGCCGTGACGCAGGGCCATGCGGAGATGGTGCAGCTGGTGGTGACGGAGGGGGCCGACGTCAACGTGGAGGACGAGGACGGAGACACGGCCATGCATACTGCGCTCGGACGGCAGCAGCTCGCCACCACCATGGCCACCACCGAGGGGGAGGGCTCCTCGCTGTACACACGGCTGCATGGCTCAGGCCTGCTGGGGAGCACAGAGCTCAATGTGGGCGCTGCCATAGCCTGCTTCCTGGCTCAGGAGGGCGCAGACATCAGTTATGCCAACCACAAAGGGAAGAGCCCCCTGGACCTGGTGACCGACGGCACAATCGTGCAGCTCATTAAGAGCTTTTCCGAGAAACACAGGACACAGCAGCTCCAGGGAAACAGCTGTGGCACtggcatcagcagcagcagtctgCGGCGCGTCCACACCACCCCCAACACCATGACCAACCTGGCCATGCCAACCTCCACAGGACCCAGCGAATGCCTCATCTGCTCAGAGCTGGCCCTGCTCATCCTCTTCTCCCCCTGTCAGCACAGCGTGGCCTGCGAGGAGTGTGCTCACCGCATGAAAAAGTGCATCAAATGCCAGGTTACAATTACGAAGAAACTCCGCCAAGACAACACGGAGGTGGAGTGCAGCCCCAGCTCGGAGAACTCGGAGCAACACAACCTGCTGGAGCAGCTGCAGTCGCGCTACCGGCAGATGGAGGAGCGAATCACCTGCCCCATCTGCATTGACAACCACATCAAGCTGGTGTTCCAGTGCGGCCACGCCTCCTGCATCGACTGCAGCGCCGCCCTGAAGACCTGCCCCATCTGCCGGCAGACCATCCGCGAGCGCATCCAGCTGTTCGTGTGA

Function

GO: NA

KEGG:

id description
K10645 MIB; E3 ubiquitin-protein ligase mind-bomb

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152845 lncRNA downstream 23947 8932163 ~ 8933163 (-) True G121912
TU152811 lncRNA downstream 86412 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 98107 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 940035 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 1111794 7830193 ~ 7845316 (-) True G121754
TU152874 lncRNA upstream 35982 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 156303 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 301825 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 629918 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 638884 9621028 ~ 9621472 (-) True G122061
AMCG00002249 mRNA downstream 10923 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002247 mRNA downstream 53522 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002240 mRNA downstream 143519 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002239 mRNA downstream 236993 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002238 mRNA downstream 248173 8706529 ~ 8708937 (-) True AMCG00002238
AMCG00002252 mRNA upstream 13558 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002248 mRNA upstream 36463 9018607 ~ 9022271 (-) True AMCG00002248
AMCG00002250 mRNA upstream 73170 9055314 ~ 9061095 (-) True AMCG00002250
AMCG00002260 mRNA upstream 211055 9193199 ~ 9193429 (-) True AMCG00002260
AMCG00002259 mRNA upstream 218442 9200586 ~ 9208699 (-) True AMCG00002259
TU152605 other downstream 1117699 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4737233 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5170566 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5240858 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5829166 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 849767 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 859951 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2542749 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2685611 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2749473 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071882 True 2671 mRNA 0.55 17 NC_007119.7 53862745 ~ 53896982 (-)
grasscarp (Ctenopharyngodon idella) CI01000050_00851621_00899726.mRNA True 4560 mRNA 0.51 20 CI01000050 851526 ~ 901164 (+)