RNA id: AMCG00002252


Basic Information

Item Value
RNA id AMCG00002252
length 543
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00002252
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 8995702 ~ 9005887 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGgTGCCCCTGAGCTGTACCCAGAGACATCACTCGCTCACTCTCCTTCCTGTCCcgccaacccccccacccccctttcccGTCGGGGTGTTAACTGAGGTGCGAGTCAAGCCGGGATCCCCCCGCCCCTCCCTGCGTGCCAGGATGGAGGTTGGTATGAGAGTGGTGCGCGGCATGGACTGGAAGTGGGGTAACCAGGATGATGGGGAGGGTCACGTGGGCACAGTGGTGGAGATCGGACGGCAGGGCAGCACCACCACCCCCGACAAGACCGTGGTAGTTCAGTGGGACAGTGGCACCCGGACGAACTACCGCACGGGCTACCAGGGCGCCTACGACCTCCTGCTGTATGACAACGCACAGATCGGTGTTCGGCACTCCAACATCATCTGTGACAGCTGCAAGAAGCACGGGATCATGGGAATGCGGTGGAAGTGTAAGGTCTGCTTCGACTATGACCTGTGCACGCAGTGTTACATGAACAACAAGCACGACCTGGCGCACGCCTTTGAACGCTACGAGACTGCTCACTCCCAGCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152845 lncRNA downstream 62539 8932163 ~ 8933163 (-) True G121912
TU152811 lncRNA downstream 125004 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 136699 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 978627 8016064 ~ 8017075 (-) True G121789
TU152604 lncRNA downstream 1150386 7830193 ~ 7845316 (-) True G121754
TU152874 lncRNA upstream 12239 9018126 ~ 9018327 (-) True G121935
TU152969 lncRNA upstream 132560 9138447 ~ 9213429 (-) True G122019
TU152989 lncRNA upstream 278082 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 606175 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 615141 9621028 ~ 9621472 (-) True G122061
AMCG00002251 mRNA downstream 13558 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002249 mRNA downstream 49515 8933969 ~ 8946187 (-) True AMCG00002249
AMCG00002247 mRNA downstream 92114 8898625 ~ 8903588 (-) True AMCG00002247
AMCG00002240 mRNA downstream 182111 8810319 ~ 8813591 (-) True AMCG00002240
AMCG00002239 mRNA downstream 275585 8712465 ~ 8720117 (-) True AMCG00002239
AMCG00002248 mRNA upstream 12720 9018607 ~ 9022271 (-) True AMCG00002248
AMCG00002250 mRNA upstream 49427 9055314 ~ 9061095 (-) True AMCG00002250
AMCG00002260 mRNA upstream 187312 9193199 ~ 9193429 (-) True AMCG00002260
AMCG00002259 mRNA upstream 194699 9200586 ~ 9208699 (-) True AMCG00002259
AMCG00002263 mRNA upstream 303529 9309416 ~ 9356970 (-) True AMCG00002263
TU152605 other downstream 1156291 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4775825 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5209158 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5279450 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 5867758 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 826024 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 836208 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2519006 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2661868 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2725730 11731617 ~ 11734324 (-) True G122597

Expression Profile