RNA id: AMCG00002254


Basic Information

Item Value
RNA id AMCG00002254
length 3140
RNA type mRNA
GC content 0.49
exon number 24
gene id AMCG00002254
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9120409 ~ 9129343 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GcgtcattttattaaaaatccaACATGGCGGCGTCCAGGAGCGAAAGAGCTAAAGCTAAAGAAAACAGTAATTCTTCTACAAACCAGGAATCAGAAGAAGTGACCGAACTTTTCCCGGGATTTAAGGATGCCGATTCATTTGTGAAGCATGGACTGGGCACAGTTGTTGCAGCGACGAAGGCTTCGGCTAACCTCCCCCAGACCGGGGACGAGTATGACTTCTACCGCAGCTTCCCCGGATTCCAGGAGTTCTGCGAGAATCAAGGAGACCGGCTTTTGCAGTGCATGAGTCAGCTAATGCAGTACCATGGCTGTAGGTCTCACATGAGAGACCGGAACAAAGTGACTGGACTGGAGGAGAGGTTTGACATGCTGGTGGATTCCAATGATGTCATTTTGGAGAGAGTGGGTATACTACTGGATGAGGCATCTGGAGTGAACAGGAACCAGCAGCCTATCTTACCAGCCGGCATTCAGCCTCCCAAGACAATCGTATCCAGCTGGAACCGCAAGGGGGGCGAGATGCGTAAAGGGTCCAGCTCTGAGATGTTCCGCCTGCTGCACGCGAAAAACATCCAGCGGCCTCAGCTGAAGTTCCGGGAGAAGGTGGATAATTCCAACACCCCTTTTGTTCCCAAGATCTTTATCAAACCCAATGCGTCAAAGCCCCTTCCGAAATattTCACAGACCAGAAGCTCCGCAAAGAGAGACCGGAGGATCTTGACGTCCCGGCAGCCCTGGCAGACTTTATCCATCAGCAGAGAACAGAGCAGCATCTGGATGATATGTTTGCCCACCCCTATCAGTATGAACTGGACCACTTTACTGTATTGGAGGCTATGCTTTCTAAGCCTGAACCCCAGATGTATAAACCACTCGATGAGACCAGCTGCCAGTTCATAGCCTCGCTGGAGGAGCTGGTTGAGCTGAACGAGAAACTGGCCAAGTGCTCCGAGTTTGCAGTGGATCTGGAAcaccaTTCGTACAGAAGTTTTCAGGGCCTCACCTGCCTGATGCAGATCTCAACCCGGCATGAAGACTTCATCATCGACACGCTGGAACTGCGCAGCGAGATGTACATCCTCAACGAGACTTTCACAGACCCCGCCATAGTAAAGgtGTTTCACGGCGCAGACTCTGACATCGAGTGGCTGCAGAAGGATTTTGGGCTGTACGTCGTCAATCTTTTCGACACACATCAGGCCTCACGCGCCCTCAACCTGGGTCGCCACTCTCTGGACCACCTGCTGAAGCTGTACTGCAGCGTCAACTCTGACAAACGCTACCAGCTAGCTGACTGGAGGATAAGACCCTTACCGGAGGAGATGTTCCATTATGCCCGAGCAGACACGCACTATCTGCTGTACATCTATGACCGCCTGAGAGTGGCGCTGCTGGACGCGGGCAACCAGCAGCCAGCTCTCCTCCACATGGTCTGGCAGAAGAGTAAGGATGTTGCTCTCAAGAAATACGCCAAGCCCATTTTCACAGAGGACTCGTATATGGAGCTGTACAAGAAACAGAAGCGGATGCTCAACACGCAGCAGCTCGCTGCGCTGCGCTTGCTGTACGGCTGGAGGGATAAGTTGGCGAGACAGGAGGACGAGAGCACGGGGTACATCTTGCCTAACCACATGCTCATTAAAATTTCGGAAGAGCTACCAAGGGAGCCTCAGGGCATCATTGCGTGTTGTAACCCTGTCCCTCCATTGGTCCGCCAGCAAGTCAATGAACTCCACCTGTTGGTGCAGCAGGCCAGAGACATGCCTCTGCTCAAGACTGAAGTAGTAACGGAAAAGAAGAAAGTACTAACACCCAAAAGAAAGGTGGAAAATGCTTTGTTTGCTCCTCATGACAGTTCACACGGCCCTGACATTGATGCCCCAGACTTTCCTTCTCCGGGGCCTCTGTCGAAGCGAGGGGTGCTCTTCACGGATGAGGAAGATCGGGACCAGCAAGAGAAAGAAGAGACTCAGGACTGGGACACACTCCTAGCTTCAGCCCAAATCACACTCTTTGAAGATCGGGATTCGGACGGCAGGGTGGAGGGTGCTAATCTCACGGTGGCGCAGCAGAAGGCCCACAGTATAATGGAGTCTTTTGAAAATCCCTTTAGAATGtatttaccTTCAAAGGACAATAACATCCACATCTCGAAAAACGCCAAGTATGACCCCTCGTCAAAAGTGTATGAGATCAGCAATAGGTGGAAGCTGCTGAGCATGGAGCAGCAGAAGAAGGAAGCTCAGGCCAAAGAGGAGGCAAAGAAGAAGGCCAAAGAAGCGGCCCAGAGAGCCACAGAGGAACGGAAGAAAGCACACAAAAGTTACCAGGAATCTCTTCAAAATGTTGCAACAGTACGGCAGCAGGCAGCACTGGTTACTGCTAAGAAGACTGGTAAGAAGCACGAGAGGAGTGTGAGCGATCCTGGAGCCGAGACTCCCAAACCAGAAAAGAAACGGCCTAAACCCATGGAGCAGCCAGCAGAACAAACCCCCGCTCCCGACGACTTCCAGCCCTTTGACTATGCCAAGTCGGATTTGAAAGTCTTTGCGGGTGGTAAACCCAAGGAGGGTACACAGTTTGATCCCAACAGCAAGCCAGCTCAGGAATCGAAACGAAaggggATTCAGGCATTCCTGGCCGAAGAGATAAGACGAGCAATCGGAGTGAATACTGGATCTGAGCCAAAGCTCACATTAACCTGCTTTGTGATACTTCGACAAGTCTCCCgaaaactgcctttttttattttataaatatgtataatttataagaAAGGCCCCTAAGTTGAGCTATACTGTTCATATAATGCTTTGTAAAGTTAttaatcagtttttaaaaattagTACAGTAATGGTGAACTATCAAGGGAATATCATTCTTCAGTCACAGTGGCCCCATGTTTATAAACATGACAGTGGTGTCTCGTCATAGTTTTGATGTTACTGAAATATGATCTCTGGTTAAGCCGAACctgtttacattaaaattatttttaaataaatttgacCGAGACCCAAAATGGTTTCTCATCTGTTTAAGACATTCTCCATGTATAATAGTTCAGCTTCCAGGGTGGTTTTCACTAGCTATGAAAGACTACAtgcaaattataataaacatattgCATAACaca

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006396 RNA processing biological_process
GO:0000176 nuclear exosome (RNase complex) cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12591 RRP6, EXOSC10; exosome complex exonuclease RRP6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152769 lncRNA upstream 303856 8816330 ~ 8816553 (+) True G121862
TU152757 lncRNA upstream 327931 8790301 ~ 8792478 (+) False AMCG00002245
TU152632 lncRNA upstream 1166785 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 1203166 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 1286198 7829807 ~ 7834211 (+) True G121722
TU152927 lncRNA downstream 118974 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 413272 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 495901 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 499255 9628598 ~ 9628833 (+) True G122063
TU153071 lncRNA downstream 564373 9693716 ~ 9759061 (+) True G122086
AMCG00002255 mRNA upstream 1343 9080514 ~ 9119066 (+) True AMCG00002255
AMCG00002256 mRNA upstream 71214 9026743 ~ 9049195 (+) True AMCG00002256
AMCG00002257 mRNA upstream 93823 9024071 ~ 9026586 (+) True AMCG00002257
AMCG00002243 mRNA upstream 187283 8921914 ~ 8933126 (+) True AMCG00002243
AMCG00002242 mRNA upstream 203830 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002253 mRNA downstream 662 9130005 ~ 9139454 (+) True AMCG00002253
AMCG00002261 mRNA downstream 22052 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002258 mRNA downstream 44627 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002262 mRNA downstream 123931 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002264 mRNA downstream 490114 9619457 ~ 9624694 (+) True AMCG00002264
TU152752 other upstream 358330 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 1723848 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2517801 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2517801 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3896911 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 714937 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 714937 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1438569 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2247597 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2499669 11629012 ~ 11630892 (+) True G122482

Expression Profile