RNA id: AMCG00002257



Basic Information


Item Value
RNA id AMCG00002257
length 1110
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00002257
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9024071 ~ 9026586 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCGGCACGGCCACAGTCCTCCAGCAGTTTGTCAGTGGCCTCAAGAGCCGCAATGAGGAGACCAGGGCCAAATCCGCCAAGGACCTTCAGCATTACGTCACCACTGAGCTGAGAGAGttGAGTCAAGAAGAAGCTACCACTTTCTATGATGAGCTGAACCATCATATCTTCGAGCTGGTGTCCAGCTCAGATGTGAACGAGAAGAAAGGAGGCATTCTTGCTATTGTCAGCTTGATTGGCGTGGAAGGTGGAAATGCCACGAGGATCAGTCGCTTCGCCAATTACCTCCGCAACCTGCTGCCATCCAGCGACCCCGTTGTCATGGAGATGGCCTCGAAAGCGATGGGCCACCTCTCGATGGCAGGGGACACCTTCACGGCAGAGTACGTGGAGTTTGAGGTGAAGAGGGCGCTGGAGTGGCTGGGGGCAGACCGGAACGAGGGACGCCGACATGCAGCGGTGCTGGTGCTGCGGGAGCTGGCGGTGAGTGCCCCCACCTTCTTCTTCCAGCAAGTCCAGCCCTTCTTTGACAACATCTTCAACGCAGTGTGGGACTCCAAGCAGGCCATCCGGGAGGGGGCGGTGTCTGCGCTGAGGGCCTGCCTCATCCTCACCACCCAGCGCGAGACCAAGGAAATGCAGAAACCCCAGTGGTATAAGCAAACCTTCGAGGAGGCCGAGAGGGGCTTTGATGAGAGTCTGGCCAAGGAGAAGGGCATGAACCGAGATGACCGAGTGCACGGCGCCCTGCTGATTCTCAATGAGCTTGTGCGCATCAGCAGCATGGAGGGAGAGCGACTCCGAGAGGAGATGGAGGAGATCACTCAGCAGCAGCTGGTCCATGACAAGTACTGCAAGGAGCTGATGGGCTTTGGGACCAAGCCCCGCCACATCACCCCCTTCACCAGCTTCCAGTCTGTTCAGCCGCAGCAGTCCAACGCCCTGCTGGGGCTCCTGGGCTACAGCACTCCGCAGGGATTCCTCAGCTTTGGGGCGACACCCTCCCCGGCCAAGACCACGCTGGTGGAGAGCCGATACTGCCGAGAGCTGATGGAGGAGCGCTTCGACCAGGCAAGTCCTTTTTTGAATGGCCGTACATTTTTTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU152769 lncRNA upstream 207518 8816330 ~ 8816553 (+) True G121862
TU152757 lncRNA upstream 231593 8790301 ~ 8792478 (+) False AMCG00002245
TU152632 lncRNA upstream 1070447 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 1106828 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 1189860 7829807 ~ 7834211 (+) True G121722
TU152927 lncRNA downstream 221731 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 516029 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 598658 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 602012 9628598 ~ 9628833 (+) True G122063
TU153071 lncRNA downstream 667130 9693716 ~ 9759061 (+) True G122086
AMCG00002243 mRNA upstream 90945 8921914 ~ 8933126 (+) True AMCG00002243
AMCG00002242 mRNA upstream 107492 8906933 ~ 8916579 (+) True AMCG00002242
AMCG00002244 mRNA upstream 130233 8873790 ~ 8893838 (+) True AMCG00002244
AMCG00002246 mRNA upstream 156107 8859433 ~ 8867964 (+) True AMCG00002246
AMCG00002241 mRNA upstream 214276 8806116 ~ 8809795 (+) True AMCG00002241
AMCG00002256 mRNA downstream 157 9026743 ~ 9049195 (+) True AMCG00002256
AMCG00002255 mRNA downstream 53928 9080514 ~ 9119066 (+) True AMCG00002255
AMCG00002254 mRNA downstream 93823 9120409 ~ 9129343 (+) True AMCG00002254
AMCG00002253 mRNA downstream 103419 9130005 ~ 9139454 (+) True AMCG00002253
AMCG00002261 mRNA downstream 124809 9151395 ~ 9152910 (+) True AMCG00002261
TU152752 other upstream 261992 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 1627510 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2421463 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2421463 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3800573 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 817694 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 817694 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1541326 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2350354 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2602426 11629012 ~ 11630892 (+) True G122482

Expression Profile