RNA id: AMCG00002258


Basic Information

Item Value
RNA id AMCG00002258
length 3305
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00002258
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9173970 ~ 9185563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAATACAGGACAAGGGGTCACTGACCCAATGCAAATAGTGGGCAAAGGTAACCTCTTGGAAACAtccacaaaatcaaacaaaataagcCTCCGTTTCAGAACTCCATTGCTATATACAGCAGTGATAATGAAGGGTTTGCTGGTAACTGCTGCCTGTTTGGTGCATTTATCTCTCTGCATCGAGCTACGGAGTTCATATGGAAGAATCACCAGCCCTCAGTTTCCTTCTCCCTACCCTAACAACATCAAGAGGGTCTGGAATATTTCAGTGCCCGTGGGACACAGAATCAAGCTCTACTTCACCCATTTCAGCCTGGAGCCATCCTTCCTGTGTGAATACGACTATGTCAAGgCTGTTACAGAAGGAAATGAGACAGTGAGTTTCTGTGGAGATGGTGAGCAAGGGTATGAAGATGCCCCTGGAAAAACAGCGTTGTATTCATCAGGAAACAAAATGTCCATCATTTTCAGATCCGACTACTCTAACGAGGCAAGATTCACTGGATTTGAAGCATTTTACTCAGCAGAAGACATTAATGAATGCATGATTACAGTCGATGGAGAGCCTTTCTGTGACCATAATTGCCACAATTATGTGGGTGGCTATTACTGCACTTGTAGACTGGGATACCAGCTCCATCCCAATAAAAGAACCTGCACTGTCGAGTGCGGTGGTCAGGTCTTCACTGAGAGATCGGGAGAGCTGACCAGCCCCGACTACCCCTTGGGATACCCCAAACTCTCCCAGTGTGACTACCGCATCCGGCTGGAGGAGGGATTCAGCCTGATCTTGGAGTTCACAGAGCCTTTTGATGTCGAGAGCCATCCGGACACTCCCTGTCCGTATGATGTCCTCAAGATTAAAACACCACAGAAGCAGTATGGGCCATTCTGCGGATCATCGCTGCCCCGGAAGATCGAAACTGGGAGCAACGAGGTGGAGGTGGTTTTCACGACAGATGACTCTGGGACCAATAGGGGATGGAAGATCAAATACACCAGCACAGCTATGCCCTGTCCTGACCCTGTAGTGCCTTCCCATGGGCAGATCCTCCCATTGCAGGCCAAGTACATCTACAAAGACAGCTTCACAGTCACATGTGAACTGGGATATGAATTACTGAAGGATAAAAAGGAGCTTTCGTCATATCGAGTCTCTTGCCAGAAAAATGGTACTTGGGACAAACCGATGCCCAGCTGCAGCAttgTTGATTGTACATTGCCTGATGAAATCGCCAATGGCAAAGTCTCTGTGACCACGACAGTCTACCAATCTGTCCTACACTATACCTGCAATACTCCCTTCTATGTATTGAAAGGCAACAAAGATGGAAAGTACACTTGTGGTCATGATGGCTACTGGAGAGACTCTGAGGGCCAAAGTGAACTTCCTGAATGTGTGCCTTCCTGTGGGATTCCACAAACCACAAAGCTGGCCCGAATTATAGGAGGTGAAACAGCGAAGATGAACGAACTGCCATGGCAGGTGCTTGTGGCAGTGGGGCAGGGGTTCAAAGGTGGTGCAGCACTGCTCTCTGACAACTGGGTCCTGACAGCCGCACACGTCCTGTACGACTACGGGGAGGTCAACAACGTGCAAGTGAAGATGGGTATGATTAACAGGATGGACAGCAACGCCATCGTAGAGGTGCCGGAAAAGATCTTCATTCACGAGCAGTACATACATAACAATGTTAACTATAACAACGACATCGCGCTCCTCAAGCTCCGCAACAAAGTGCCCATCAGCTCCAAGGTCATGCCCGTCTGCTTACCTCCAAGAGAGCAGCAGCAACCCGTCAATACGGACGATTTGGGGATTGTGTCAGGGTGGGGGGTAACCAAGACAACTGGGCTGGTCCGTGGGGCTATTTTGCTGAAGTACGTTGAGTTGCCTGTCGTGGACTTTGAGGTTTGTAAAGCTGCGTATCGGGGTAAAGTGGCACAGAACGGTGAGCCACTGCAGGTCACTGAGAATATGATCTGTGCCGGCTTCCCCGAAGGAGGCAAGGACTCCTGTCAGGGAGACAGCGGTGGTCCATATGTGTTTTATGACAGCAGCAAAATAAGCTGGTTTATTGGAGGAATTGTGTCCTGGGGCTATGAATGTGCAGGCGTGGGTCAGTATGGTGTGTACACTAAAGTAAGCAACTATGTCCCCTGGATTGAAGATATTATGTCAAAAAACTAACAGCCCTTCACCTTCCACCAGCTTTTGTGAGGGATCAGATTTAACCATGTATTAATCATTAATTCGGTATTTGGTTACCTAAAATTACTGTGATTTTAAAGACCACAACTGAAAAACATCTCATTAACTTTAGTGTGATAAACAAGCCTGACACCCTCAGAGACTGTAGGAAAAGACTACACACAGTGTGTAACTCAGTGTAAAATACACGCCTCCCAATGAATCCTGTTATAATCAAGTCAAATCATGCCTGAAGTGGTTTCTGAAACGGTGCCGTAATTGTCACATTTCTACTTTGGAAAGCAATACTTGCTCAGGAAACATTTCTTCACAGAATTAACACAAATTAAgctatactttttattttatatatattttgatttcaatTTGCATAAGAGATTCAAACAAGGTATGTGTAGCAAATCGAACTGGAATCGGCTTTCTAGTCTCAATTCCAAACACCATGATTTGTGGTAATTTAGCCttcataaataatgcatttaatctcTGTGTTCCCTGACTATTTTCTATCAAAACaatcattaaatgtttctgcATTTTGACATGTACAGCCTTTTACACTGtgattaaataatacagttaTAGACCAATATTTTTCTGCCTTCCTATTTCCTAAGTGCAGTGTAATGTTTTcacataaattataaattagtcTAATAGGGGGAACAATCAAAAATGGATATCTGATGAGTTTTTCTTTAGTCAAAATTCTAGAGTCTCAACAGACTAATCGCTAGAAGACCTGACTAGAATTGGTAACTTTCCCGAATCTATCTGGGAAATGAATCCGTATAAAGCTATCCAAATGctttactacagtactacagtaaTTACAGTCATCTTTTTTAGCATCTGTTCATGGGAATTACATTGGGTGAATTAATACatgtaacaaaaaagaaaacttgaatTTTCATGGGAGATTGctgttgtgtaaatatttatggaaattaaacaaagcagAATGCACAAGACGAACAAAATTGTGTTAGAGTgtcattaaaccattttaaaattttgTATTGCAGTGCCAGTCAAGCAGAAAAATATGGCAGGGGTGGTGATGGGGATTGTCCCTCAAATGTCACACGG

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03993 MASP2; mannan-binding lectin serine protease 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152769 lncRNA upstream 357417 8816330 ~ 8816553 (+) True G121862
TU152757 lncRNA upstream 381492 8790301 ~ 8792478 (+) False AMCG00002245
TU152632 lncRNA upstream 1220346 7945365 ~ 7953624 (+) True G121767
TU152587 lncRNA upstream 1256727 7910558 ~ 7917243 (+) True G121741
TU152562 lncRNA upstream 1339759 7829807 ~ 7834211 (+) True G121722
TU152927 lncRNA downstream 62754 9248317 ~ 9313334 (+) True G121981
TU152945 lncRNA downstream 357052 9542615 ~ 9562591 (+) True G121999
TU153022 lncRNA downstream 439681 9625244 ~ 9626221 (+) True G122058
TU153035 lncRNA downstream 443035 9628598 ~ 9628833 (+) True G122063
TU153071 lncRNA downstream 508153 9693716 ~ 9759061 (+) True G122086
AMCG00002261 mRNA upstream 21060 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002253 mRNA upstream 34516 9130005 ~ 9139454 (+) True AMCG00002253
AMCG00002254 mRNA upstream 44627 9120409 ~ 9129343 (+) True AMCG00002254
AMCG00002255 mRNA upstream 54904 9080514 ~ 9119066 (+) True AMCG00002255
AMCG00002256 mRNA upstream 124775 9026743 ~ 9049195 (+) True AMCG00002256
AMCG00002262 mRNA downstream 67711 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002264 mRNA downstream 433894 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002266 mRNA downstream 469170 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002272 mRNA downstream 658642 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002274 mRNA downstream 667987 9853550 ~ 9863089 (+) True AMCG00002274
TU152752 other upstream 411891 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 1777409 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 2571362 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 2571362 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 3950472 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 658717 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 658717 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 1382349 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 2191377 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 2443449 11629012 ~ 11630892 (+) True G122482

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043167 False 1166 mRNA 0.48 9 NC_007134.7 28770301 ~ 28792889 (+)