RNA id: AMCG00002259


Basic Information

Item Value
RNA id AMCG00002259
length 2653
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00002259
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9200586 ~ 9208699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTGTCTTTGCTTTGCATATGACTCTTGTTTTGTAGAGGTGGGGAATGAAATCGCGTTTAATAACCATCTCTTAGACAAGTTTAGCATactattttatcattttcattacGGGAATATATGGGAATGTACTATACTCTGTAACGGTGTTTACAAACGGATGGCATTGGTATCCTTTAGTTTCAGCAATGACAGAACTGAAGCCCTGTAAAGTGTGTAACTATTCGCGCAAGCAATCGCACGGATTGGCGGTGAAGTCTTTGGgtgaactgaaaataaaagGGTCTGAGGCCTTGGGGTTTACACCTGGAAGTGCTGTCTCGGTGCGCCTTGAGGATGATGGGACCATAGTTGAAGATGAAACCTATTTCCTGTGTTTGCCTGCAAACACCAAATTTATGCTTTTGCAAGACAAGGAGAAGTGGGCCCCGTTAACTAAATTTGATGGGGGAACAGCCTGGATGAGCGTTGATATCGATGCAGATATAGAGGGAGACGTGTTGGACAGTGGTCAACCAGCCGCTGAGTGCTGGCAGGACCTGGCCAGGAAGCTGAAACAGGACCTGTCCAGCCTCATACTGATGTCAGAGGCAGACCTCCAGAGCCTGGTGAAGGTGCCCAGTGCAGAGCTGGCGGCAGAGCTGGGCTATCAGGAGAGCAAAATGAAAACTCTGCAGGACAGGCTGCAGAACGTGCTGGACCGCCGAGAAGAGGACCGCCAGTTCAAAGAGCTGCTGCAGCTGTTCCTCAAGGCAGAGCACAGTGAGAGCACCAGGGATCCCGGACAAGAAGATGTTCCAGATGGGACTGAGCTGATGGTGGTGGATGCCCCGAAGACAGTCTCCAAATTCAGTGCACGGACGCTTATGGTATTAAAAGGGAAAACCAGCCCGGAGACCCGGCTGTCAACCAGCGAGCTGCAGGAGGTGATCAGGGAGGGGTCAGAGCAGATGTCCGTGGTCTTGGGGTGGGATGCCGTGAAAACGGACAACTTGCTGCAGGCCTGTGAGGAAGAACTGAAGAAACGTTTAGAGCAAGTCACCGCCATGCAATCCCTCCACTCCCTCTCCAAACACAACATGGCCAAGGACAACAATGGAGCAACGCCGGCCAAGCGCCCAAAGTAGCCCCCTTTTTATACCCAGAATCCCCTGTATGCTGGCGCTTCTTTTCAGAGTCTGTGTCGCATTGCTCATCTGCACAGCAGGATTGCTCCCACTCACCAGCAAAGGGAAATGCTCTGTATTGAGGggttaacaaaaaacaaaaactggacaGGATGCTGTCTGTCACTGCATGGGTGGTGATGATGCGCGCTGCTCAGCTGCTCATTTGCTGCAGGCCATGAGCACACCGGCGACTGTGATGTCATCACCAGCTGTTTCAGCTATTTAACCTCTCACCTCTCACTCTTGCAGTAGCTGTTCAAACTAAAAGGAAGACTGCAACCATGAGCCAGTCCAACCCTGCCCAGAGCAACCCTTATTTGATAGACCTTTGATAGAACAAGACTTTTTGTTTGATTGCGTTTCCTGCATATGGCATCCATAAACACATTAAAGGgtctggttttatttgtttttgttacttttcattaatattaatgtgaTTTCTTCTTCCTGAAGTACATGCTTCAGCACTCAATCTGGAACTGAATGTGCAACGATCAAGTGTGACGCCAAGGCTAGCATGCAGTTATTCTCACCCatatgaaaagcagaaaaacaaaatcccccTTCACAGCCATAGTATTTTTAAAGTCCCCTGCCAATATGTAGTGTAAAGTtacaagttaaaaaagaaaaattagaCCTAATACCAACCAGATTTCCCTTCTTGATGCACTGTAGTAAATATGTTCTCTCCATCTCCTTTGTGAGTATTCCTCAGGTTTTACTTGCACCTATATGTGATCTGTGACTTTTTAAAGAACAGAGCGGGGGGGTGAGTTGCCTGCCCTGTATAGATAGTTATGTACTAGAAGAAGCCTCCCCAGTATCGTGCCAAATATACCTAGAAGCGTGATCTTGTCTCACTGATGAAAgacttttaaatgacaaaaaaaagaatgtttGATCATAATGGGATGTGTTTctttgagttttatttaataatttttgaTACATCTGGGATTATTTTTGTAGTATGAGAATATTATTTCCTGATGTTACTTGTGTGtttacaaagacattttaagTCTCATGTCctttgtttaaaattgtatcaAACTTGAGGTGTGATATTTGTTGTGTACCAGTTGCTCTTGCTGAAATTAGAAACATTGTTAGTAGTAATGTCTTTTACAGTTGTTTATATACATGCAATATGGTATTCCGCAGGTTATTTGTTTCCAATTTTAAACACTCCTAGTACATCCTTCCCACgatatatcaattaaaattgAATACTGTGTGGGTTTGATATCCTGGCATAGTTAACATTTAATCTAAATGCTGTTGCAGGATATTGTTAATTGATTATATCATGATTTATACTCTTGTTGAATTGGAAATGATAATCAATAGACTGCTTATGCATTAATGATGAGTCATTCTATTAACATTGTGGCAATGGTTTATACCGTGCCTATAGTAAATCAACAACCCCTTTAAAACagtttcaccttttgttgcatTAAAATTCAGTAAAatta

Function

GO: NA

KEGG:

id description
K02310 DFFA, DFF45; DNA fragmentation factor, 45 kD, alpha subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152874 lncRNA downstream 182259 9018126 ~ 9018327 (-) True G121935
TU152845 lncRNA downstream 267423 8932163 ~ 8933163 (-) True G121912
TU152811 lncRNA downstream 329888 8868645 ~ 8870698 (-) True G121885
TU152800 lncRNA downstream 341583 8825431 ~ 8859003 (-) True G121875
TU152667 lncRNA downstream 1183511 8016064 ~ 8017075 (-) True G121789
TU152989 lncRNA upstream 75270 9283969 ~ 9287587 (-) True G122037
TU153015 lncRNA upstream 403363 9612062 ~ 9614287 (-) False AMCG00002265
TU153025 lncRNA upstream 412329 9621028 ~ 9621472 (-) True G122061
TU153107 lncRNA upstream 548726 9757425 ~ 9775995 (-) False AMCG00002275
TU153141 lncRNA upstream 639536 9848235 ~ 9851376 (-) True G122131
AMCG00002260 mRNA downstream 7157 9193199 ~ 9193429 (-) True AMCG00002260
AMCG00002250 mRNA downstream 139491 9055314 ~ 9061095 (-) True AMCG00002250
AMCG00002248 mRNA downstream 178315 9018607 ~ 9022271 (-) True AMCG00002248
AMCG00002252 mRNA downstream 194699 8995702 ~ 9005887 (-) True AMCG00002252
AMCG00002251 mRNA downstream 218442 8957110 ~ 8982144 (-) True AMCG00002251
AMCG00002263 mRNA upstream 100717 9309416 ~ 9356970 (-) True AMCG00002263
AMCG00002265 mRNA upstream 400051 9608750 ~ 9620127 (-) True AMCG00002265
AMCG00002271 mRNA upstream 419951 9628650 ~ 9629679 (-) True AMCG00002271
AMCG00002267 mRNA upstream 421431 9630130 ~ 9637266 (-) True AMCG00002267
AMCG00002270 mRNA upstream 434547 9643246 ~ 9650610 (-) True AMCG00002270
TU152605 other downstream 1361175 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 4980709 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5414042 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5484334 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6072642 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 623212 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 633396 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 2316194 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2459056 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2522918 11731617 ~ 11734324 (-) True G122597

Expression Profile