RNA id: AMCG00002266



Basic Information


Item Value
RNA id AMCG00002266
length 1026
RNA type mRNA
GC content 0.60
exon number 1
gene id AMCG00002266
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9654733 ~ 9655758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTCGTACGGCCGGAGCCTTTGACATATCGCCATTTACACGGGGCCGGGTAGTTGGGCAGTCAGAGTGCGGTCACAGTGAGAGGCAGATAGCGAGGACTCTGGGTCTTGCGAATGGGACAGTTCACAACATCATTGTTAAATATCGCCAGTCCAATGAAACCGCAGTCAATCACCGACCCGGCCGGCCATCCATGCTCACAGAGCGAACCAAAAAAGCCCTCGTCCGCGTCGTGAGCTCCAATCCGCGCACCAAGCTGGTAGACATCGCCAGCAGCGTCAACCTGTCCCAGCGGACGGCGCAGCGCTACCTGCACAAACTGGGCTACAACGGCAGCGTGGCTCGCCCCAAGCCTCTCCTCACGAAAGCCAGCATAAAGCGCCGCTTCGCATGGGCCCAGGAAATGCAGGACAAGCCGGCGGCATTTTGGAAGTCGGTCCTGTTCTCAGACCAGACTCAGTTCCAGCAGTTCACATCCAATGGACGGTCGTGGGCGTGGAGGAAGGCTGGCCAGGCGTTTCAGGAGGCTTGTTTGCAGCCCACGGTGCAGGAGGATGGCTTCAGTGTGATGGTGTGGGCAGCGGTTTGGGACGCTGGGAAGACCGAGCTGGTGTTCACTGAGGGCCCCCTGACCTCCGCAGAGTACGTGTCCATTCTCGAGAAGCATCTCCTGCCGTGTTTCCAGCAGGGGGTCGTGCAGCTGGACACGCATGTGCTGCAGGAGGAGGGCGCCAGCTGTCACACCTGCAAAAGCAGCACCCAGTGGAAGAGCGAGCAGCGGCTGCAGGTGCTCTCCTGGGCGCCCAGGAGCCCCGACATGAACCCCATCACGCACATCTGGGAGCACCTTGACCGGCAGCTGCAGAAGACAAAACCGCCCCCCACGTCCGTTTCAGCTCTGAAGGACATATTGACTGGACTCTGGCACAACCTGGAGCAGACCTTCATCCAGAGCCTTATTGCTTCAATGCAGCAGCGTGTGCTCGCCCTGCACGACGCCCGCGGGAAAGCTACCAGCTTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153035 lncRNA upstream 25900 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 28512 9625244 ~ 9626221 (+) True G122058
TU152945 lncRNA upstream 92142 9542615 ~ 9562591 (+) True G121999
TU152927 lncRNA upstream 341399 9248317 ~ 9313334 (+) True G121981
TU152769 lncRNA upstream 838180 8816330 ~ 8816553 (+) True G121862
TU153071 lncRNA downstream 37958 9693716 ~ 9759061 (+) True G122086
TU153125 lncRNA downstream 173996 9829754 ~ 9830678 (+) True G122119
TU153132 lncRNA downstream 188522 9844280 ~ 9849012 (+) False AMCG00002272
TU153135 lncRNA downstream 207198 9862956 ~ 9898880 (+) True G122126
TU153225 lncRNA downstream 423989 10079747 ~ 10132200 (+) True G122198
AMCG00002264 mRNA upstream 30039 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 370300 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 469170 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002261 mRNA upstream 501823 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002253 mRNA upstream 515279 9130005 ~ 9139454 (+) True AMCG00002253
AMCG00002272 mRNA downstream 188447 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002274 mRNA downstream 197792 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002273 mRNA downstream 217589 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 295248 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 645549 10301307 ~ 10304361 (+) True AMCG00002287
TU152752 other upstream 892654 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2258172 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3052125 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 3052125 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 4431235 5218830 ~ 5223498 (+) True AMCG00002152
TU153130 other downstream 188522 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other downstream 188522 9844280 ~ 9849012 (+) False AMCG00002272
TU153306 other downstream 912154 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1721182 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1973254 11629012 ~ 11630892 (+) True G122482

Expression Profile